View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_56 (Length: 301)
Name: NF0243_low_56
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 37785856 - 37785583
Alignment:
| Q |
1 |
agcaattacctatcaaagataagagcaagaggaatggtgaaagctgatgcaaaagtgagacggtaagcagtggccaccctcatgctcatcccatcattta |
100 |
Q |
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| T |
37785856 |
agcaattacctatcaaagataagagcaagaggaatggtgaaagctgatgcaaaagtgagacggtaagcagtggccaccctcatgctcatcccatcattta |
37785757 |
T |
|
| Q |
101 |
tggcaagcttgcatatgatattcacagctgcacctgcaatctgcacaaacaacattaggatcactggttttactccttccaatgaattacctatcccctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37785756 |
tggcaagcttgcatatgatattcacagctgcacctgcaatctgcacaaacaacattaggatcactggttttactccttccaatgaattacctatcccctt |
37785657 |
T |
|
| Q |
201 |
catcttcacatgcaatttataattatgctgctattgggttttgagattcagaaattagagagaagataatggtg |
274 |
Q |
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| T |
37785656 |
catcttcacatgcaatttataattctgttgctattgggttttgagattgagaaattagagagaagataatggtg |
37785583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 37806531 - 37806351
Alignment:
| Q |
8 |
acctatcaaagataagagcaagaggaatggtgaaagctgatgcaaaagtgagacggtaagcagtggccaccctcatgctcatcccatcatttatggcaag |
107 |
Q |
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| T |
37806531 |
acctatcaaagataaaagcaagaggaatagtgaaagctgatgcaaaagcgaggcggtaggcagaagcaaccctcatactcatcccatcatttataacgag |
37806432 |
T |
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| Q |
108 |
cttgcatatgatattcacagctgcacctgcaatctgcacaaacaacattaggatcactggttttactccttccaatgaatt |
188 |
Q |
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| T |
37806431 |
cttgtacatgatattcacagcagcatatgcaatctgcacaaacaacattaggatgattggttttagtgcttgcaatgaatt |
37806351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 5 - 209
Target Start/End: Complemental strand, 37796494 - 37796290
Alignment:
| Q |
5 |
attacctatcaaagataagagcaagaggaatggtgaaagctgatgcaaaagtgagacggtaagcagtggccaccctcatgctcatcccatcatttatggc |
104 |
Q |
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||||||| ||||||| ||| |||| ||||| ||||||||||||||| || |||| ||||||||||| || |||||||| ||||||||||||||||| | |
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| T |
37796494 |
attacctgtcaaagaaaagggcaactggaatagtgaaagctgatgcacaaatgaggcggtaagcagtcgcaaccctcatactcatcccatcatttataac |
37796395 |
T |
|
| Q |
105 |
aagcttgcatatgatattcacagctgcacctgcaatctgcacaaacaacattaggatcactggttttactccttccaatgaattacctatccccttcatc |
204 |
Q |
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|||||||| |||||||||| ||| ||| ||||||||||||||||| ||| | || |||||||||| ||||| |||||| |||| || |||||||| |
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| T |
37796394 |
gagcttgcacatgatattcatagcagcatatgcaatctgcacaaacaccataacaatgactggttttagtccttgcaatgagttacatacttccttcatc |
37796295 |
T |
|
| Q |
205 |
ttcac |
209 |
Q |
| |
|
||||| |
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| T |
37796294 |
ttcac |
37796290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 37778725 - 37778545
Alignment:
| Q |
8 |
acctatcaaagataagagcaagaggaatggtgaaagctgatgcaaaagtgagacggtaagcagtggccaccctcatgctcatcccatcatttatggcaag |
107 |
Q |
| |
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||||||||||| || |||||| |||| |||||||| | ||||||| |||| |||||||| |||||||||||||||||||| ||||| |||||| | || |
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| T |
37778725 |
acctatcaaagtaaacagcaaggggaacagtgaaagccgctgcaaaactgaggcggtaagcggtggccaccctcatgctcattccatcgtttatgacgag |
37778626 |
T |
|
| Q |
108 |
cttgcatatgatattcacagctgcacctgcaatctgcacaaacaacattaggatcactggttttactccttccaatgaatt |
188 |
Q |
| |
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|||| | |||||||||||||| ||| ||||||||| || || ||||| | ||||||||||| ||||| ||||||||| |
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| T |
37778625 |
cttgtacatgatattcacagcagcaaatgcaatctggcaaaccaccattaacaccactggttttagtccttgcaatgaatt |
37778545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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