View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_61 (Length: 287)
Name: NF0243_low_61
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_61 |
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| [»] scaffold0045 (3 HSPs) |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 46 - 287
Target Start/End: Complemental strand, 25503 - 25262
Alignment:
| Q |
46 |
tatatatattaccctaagcttttttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatatatatccagcagct |
145 |
Q |
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| T |
25503 |
tatatatattaccctaagcttttttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatatatatccagcagct |
25404 |
T |
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| Q |
146 |
actagagagacaatgttgtctacaacttctttgtcactcaatttgtcaccatcatcatcttcaatttgcatcaacccatccattagatcaattgtttcca |
245 |
Q |
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| T |
25403 |
actagagagacaatgttgtctacaacttctttgtcactcaatttgtcaccatcatcatcttcaatttgcatcaacccatccattagatcaattgtttcca |
25304 |
T |
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| Q |
246 |
ccttatctttattctttctgttatctaattccatcccgaaaa |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
25303 |
ccttatctttattctttctgttatctaattccatcccgaaaa |
25262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 69 - 281
Target Start/End: Complemental strand, 32690 - 32478
Alignment:
| Q |
69 |
ttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatatatatccagcagctactagagagacaatgttgtctac |
168 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |
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| T |
32690 |
ttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagtagggatatatccagcagccactagagagacaatgttgtctac |
32591 |
T |
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| Q |
169 |
aacttctttgtcactcaatttgtcaccatcatcatcttcaatttgcatcaacccatccattagatcaattgtttccaccttatctttattctttctgtta |
268 |
Q |
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| T |
32590 |
aacttctttgtcactcaatttatcaccttcaccatcttcaatttgcatcaacccatccattagatcacttgtttcaaccttattttcagcttttcttttc |
32491 |
T |
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| Q |
269 |
tctaattccatcc |
281 |
Q |
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| T |
32490 |
tctaattccatcc |
32478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 55 - 281
Target Start/End: Complemental strand, 40091 - 39862
Alignment:
| Q |
55 |
taccctaagcttttttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatatatatccagcagctactagagag |
154 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |||||||| | |||| ||||||||| || ||||||||| || ||||||||| |
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| T |
40091 |
taccctaagcttttttagaacaattggatacttagcaagaaggtaaatagcccacatggatgaaagggaagtagacatatatccaccaatcactagagag |
39992 |
T |
|
| Q |
155 |
acaatgttgtctacaacttctttgtcactcaatttgtcaccatcatcatcttcaatttgcatcaacccatccattagatcaattg---tttccaccttat |
251 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||||| |
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| T |
39991 |
acaatgttgtctacaacttctttgtcactcaatttatcaccttcaccatcttcaatttgcatcaacccatccattagatcacttgtacttttcaccttat |
39892 |
T |
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| Q |
252 |
ctttattctttctgttatctaattccatcc |
281 |
Q |
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| T |
39891 |
tttcattctttcttttacctaactccatcc |
39862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 46 - 287
Target Start/End: Original strand, 4720 - 4962
Alignment:
| Q |
46 |
tatatatattaccctaagctttt-ttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatatatatccagcagc |
144 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4720 |
tatatatattaccctaagctttttttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatagatatccagcagc |
4819 |
T |
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| Q |
145 |
tactagagagacaatgttgtctacaacttctttgtcactcaatttgtcaccatcatcatcttcaatttgcatcaacccatccattagatcaattgtttcc |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4820 |
tactagagagacaatgttgtctacaacttctttgtcactcaatttgtcaccatcatcatcttcaatttgcatcaacccatccattagatcaattgtttcc |
4919 |
T |
|
| Q |
245 |
accttatctttattctttctgttatctaattccatcccgaaaa |
287 |
Q |
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|||||||||||||| ||||||||||||| ||| |||| ||||| |
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| T |
4920 |
accttatctttattttttctgttatctatttcaatccagaaaa |
4962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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