View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0243_low_7 (Length: 523)

Name: NF0243_low_7
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0243_low_7
NF0243_low_7
[»] chr3 (16 HSPs)
chr3 (316-499)||(23476897-23477081)
chr3 (401-507)||(23445731-23445837)
chr3 (48-223)||(23433574-23433749)
chr3 (406-513)||(23433801-23433908)
chr3 (316-392)||(23497346-23497422)
chr3 (434-513)||(23497438-23497517)
chr3 (95-223)||(23476733-23476861)
chr3 (471-513)||(23452658-23452700)
chr3 (48-94)||(23461443-23461489)
chr3 (466-507)||(23350436-23350477)
chr3 (460-513)||(23461755-23461808)
chr3 (469-507)||(36000939-36000977)
chr3 (478-507)||(23438383-23438412)
chr3 (96-145)||(23470478-23470527)
chr3 (478-507)||(23470883-23470912)
chr3 (48-91)||(23350154-23350198)
[»] scaffold0201 (1 HSPs)
scaffold0201 (460-513)||(9927-9980)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 8e-50; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 316 - 499
Target Start/End: Original strand, 23476897 - 23477081
Alignment:
Q  316 atgacttcgcctccaattgatgtaggctgtaactcatcattataactttcctggccatcttcactttcattgttagaataatct-acccaccagaatatt 414  Q
    |||||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||||| |||||||||||||  |||   |||   |||||||||    
T  23476897 atgacttcacctccaattgctgaaggctgtaactcatcattataattttcctggccatcttcaatttcattgttagaccaataagacctgtcagaatatt 23476996  T
Q  415 gagcactgaattttaatttaccaatttcgctaccatccagatccgactcatgttctaagtcatatacaggtaagaccccacaccc 499  Q
    ||  |||||||||||||||||||||||| |||||| |||||||||||| ||||||||||| |||||||||||||| |||||||||    
T  23476997 gattactgaattttaatttaccaatttccctaccagccagatccgacttatgttctaagttatatacaggtaagatcccacaccc 23477081  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 401 - 507
Target Start/End: Original strand, 23445731 - 23445837
Alignment:
Q  401 cccaccagaatattgagcactgaattttaatttaccaatttcgctaccatccagatccgactcatgttctaagtcatatacaggtaagaccccacacccc 500  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  23445731 cccaccagaatattgagcactgaattttaatttaccaatttccctaccatccagatctgacttatgttctaagttatatacaggtaagaccccacacccc 23445830  T
Q  501 tttatcc 507  Q
    |||||||    
T  23445831 tttatcc 23445837  T

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Target: chr3; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 48 - 223
Target Start/End: Original strand, 23433574 - 23433749
Alignment:
Q  48 gacctgtccaatatgttgtttcagcacaaagttattgcattacaccgggaatcatgagaattttaaaacaattatttatttgaaggattgaactctttct 147  Q
    ||||||||||||||||||||||||||||||||||||||| ||  | |||||||||||||| ||||||||||||||| |||||||||||| ||||||||||    
T  23433574 gacctgtccaatatgttgtttcagcacaaagttattgcaataggcagggaatcatgagaa-tttaaaacaattattcatttgaaggattaaactctttct 23433672  T
Q  148 gtnnnnnnnnnntcaactaataaggaatttataattagaaagtgggtgaaaaga---ataccgattgaacagcaaggat 223  Q
     |          ||||||||||| ||||||||||||||||||| ||||||||||   ||||||||||||||||||||||    
T  23433673 at--aaaaaaaatcaactaataaagaatttataattagaaagtaggtgaaaagattcataccgattgaacagcaaggat 23433749  T

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Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 406 - 513
Target Start/End: Original strand, 23433801 - 23433908
Alignment:
Q  406 cagaatattgagcactgaattttaatttaccaatttcgctaccatccagatccgactcatgttctaagtcatatacaggtaagaccccacacccctttat 505  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| |||||||||| |||||||||||| ||    
T  23433801 cagaatattgagcactgaattttaatttaccaatttccctaccatccagatccgacttatgttctaagttatacacaggtaagatcccacaccccttgat 23433900  T
Q  506 cctctctg 513  Q
    || |||||    
T  23433901 cccctctg 23433908  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 316 - 392
Target Start/End: Original strand, 23497346 - 23497422
Alignment:
Q  316 atgacttcgcctccaattgatgtaggctgtaactcatcattataactttcctggccatcttcactttcattgttaga 392  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||    
T  23497346 atgacttcacctccaattgatgtaggttgtaactcatcattataatttccctggccatcttcactttcattgttaga 23497422  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 434 - 513
Target Start/End: Original strand, 23497438 - 23497517
Alignment:
Q  434 accaatttcgctaccatccagatccgactcatgttctaagtcatatacaggtaagaccccacacccctttatcctctctg 513  Q
    ||||||||| | ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  23497438 accaatttcccaaccatccagattcgacttatgttctaagttatatacaggtaagaccccacacccctttatcccctctg 23497517  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 95 - 223
Target Start/End: Original strand, 23476733 - 23476861
Alignment:
Q  95 ggaatcatgagaattttaaaacaattatttatttgaaggattgaactctttctgtnnnnnnnnnntcaactaataaggaatttataattagaaagtgggt 194  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||| |          | |||||||| |||||||||||||||||||| | |    
T  23476733 ggaatcatgagaattttaaaacaattattcatttgaaggattaaactctttctat---atcaaaataaactaatatggaatttataattagaaagtagat 23476829  T
Q  195 gaaaaga---ataccgattgaacagcaaggat 223  Q
    || ||||   ||||||||||||||||||||||    
T  23476830 gagaagattcataccgattgaacagcaaggat 23476861  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 513
Target Start/End: Original strand, 23452658 - 23452700
Alignment:
Q  471 aagtcatatacaggtaagaccccacacccctttatcctctctg 513  Q
    |||||||||||||||||||| |||||||||||||||| |||||    
T  23452658 aagtcatatacaggtaagactccacacccctttatcccctctg 23452700  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 23461443 - 23461489
Alignment:
Q  48 gacctgtccaatatgttgtttcagcacaaagttattgcattacaccg 94  Q
    |||||| ||||||||||||||||||| |||||||||||| |||||||    
T  23461443 gacctgcccaatatgttgtttcagcataaagttattgcaatacaccg 23461489  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 507
Target Start/End: Original strand, 23350436 - 23350477
Alignment:
Q  466 gttctaagtcatatacaggtaagaccccacacccctttatcc 507  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  23350436 gttccaagtcatatagaggtaagaccccacacccctttatcc 23350477  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 23461755 - 23461808
Alignment:
Q  460 actcatgttctaagtcatatacaggtaagaccccacacccctttatcctctctg 513  Q
    ||||| |||||||| |||||||||||| |||||||||||| ||||||| |||||    
T  23461755 actcacgttctaaggcatatacaggtatgaccccacacccttttatcccctctg 23461808  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 507
Target Start/End: Original strand, 36000939 - 36000977
Alignment:
Q  469 ctaagtcatatacaggtaagaccccacacccctttatcc 507  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  36000939 ctaagtcatatacagggaagaccccacaaccctttatcc 36000977  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 507
Target Start/End: Original strand, 23438383 - 23438412
Alignment:
Q  478 atacaggtaagaccccacacccctttatcc 507  Q
    ||||||||||||||||||||||||||||||    
T  23438383 atacaggtaagaccccacacccctttatcc 23438412  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 23470478 - 23470527
Alignment:
Q  96 gaatcatgagaattttaaaacaattatttatttgaaggattgaactcttt 145  Q
    ||||||||||||||||||||||||| || | |||||||||| || |||||    
T  23470478 gaatcatgagaattttaaaacaattcttcaattgaaggatttaaatcttt 23470527  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 507
Target Start/End: Original strand, 23470883 - 23470912
Alignment:
Q  478 atacaggtaagaccccacacccctttatcc 507  Q
    ||||||||||||||||||||||||||||||    
T  23470883 atacaggtaagaccccacacccctttatcc 23470912  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 23350154 - 23350198
Alignment:
Q  48 gacctgtccaata-tgttgtttcagcacaaagttattgcattaca 91  Q
    ||||||||||||| ||||||||||||||||||| |||||| ||||    
T  23350154 gacctgtccaataatgttgtttcagcacaaagtaattgcaataca 23350198  T

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Target: scaffold0201 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 9927 - 9980
Alignment:
Q  460 actcatgttctaagtcatatacaggtaagaccccacacccctttatcctctctg 513  Q
    ||||| |||||||| |||||||||||| |||||||||||| ||||||| |||||    
T  9927 actcacgttctaaggcatatacaggtatgaccccacacccttttatcccctctg 9980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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