View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_72 (Length: 265)
Name: NF0243_low_72
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_72 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 27 - 265
Target Start/End: Original strand, 53498839 - 53499078
Alignment:
| Q |
27 |
tcaatatttactttatatcatgcacattctttagcttttgataactaattttttggtgctcaattaactaatgcagctgtcatcaaaaggaggtgcatgg |
126 |
Q |
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| T |
53498839 |
tcaatatttactttatatcatgcatattctttagcttttgataactaattttttggtgctcaattaactaattcagctgtcatcaaaaggaggtgcatgg |
53498938 |
T |
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| Q |
127 |
gatgagattgactttgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtg-ttagccaaggcaaaggtaacagagagcaacaat |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
53498939 |
gatgagattgactttgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtgtttagccaaggcaaaggtaacagagagcaacaat |
53499038 |
T |
|
| Q |
226 |
tttacctttggtttgacccaactgcagcttttcacacata |
265 |
Q |
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| T |
53499039 |
tttacctttggtttgacccaactgcagattttcacacata |
53499078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 41 - 265
Target Start/End: Original strand, 53492549 - 53492773
Alignment:
| Q |
41 |
atatcatgcacattctttagcttttgataactaattttttggtgctcaattaactaatgcagctgtcatcaaaaggaggtgcatgggatgagattgactt |
140 |
Q |
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|||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
53492549 |
atattatgcatattctttagcttt-gataactaattttttggtgctcaattaactaattcagctgtcatcaaaaggaggtgcatgggatgaaattgactt |
53492647 |
T |
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| Q |
141 |
tgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtg-ttagccaaggcaaaggtaacagagagcaacaattttacctttggttt |
239 |
Q |
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| T |
53492648 |
tgaattcttgggaaatttgagtggtgatccttacatccttcataccaatgtgtttagccaaggcaaaggtgacagagagcaacaaatttacctttggttt |
53492747 |
T |
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| Q |
240 |
gacccaactgcagcttttcacacata |
265 |
Q |
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| T |
53492748 |
gacccaactgcagattttcacacata |
53492773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 124 - 248
Target Start/End: Complemental strand, 53489437 - 53489312
Alignment:
| Q |
124 |
tgggatgagattgactttgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtgt-tagccaaggcaaaggtaacagagagcaac |
222 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| | |||||||||||| |||||||||||| |
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| T |
53489437 |
tgggatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcatacaaatgtgtacacccaaggcaaaggggacagagagcaac |
53489338 |
T |
|
| Q |
223 |
aattttacctttggtttgacccaact |
248 |
Q |
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|||| || | ||||||||||||||| |
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| T |
53489337 |
aattctatttatggtttgacccaact |
53489312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 265
Target Start/End: Original strand, 53494978 - 53495120
Alignment:
| Q |
124 |
tgggatgagattgactttgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtg-ttagccaaggcaaaggtaacagagagcaac |
222 |
Q |
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|||||||||||||||||||||||||| || ||| ||||||| || || |||| ||||||||||||||| || | ||||| ||||| || ||||| |||| |
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| T |
53494978 |
tgggatgagattgactttgaattcttagggaatgtgagtggagaaccatacactcttcacaccaatgtgttttgtcaaggaaaaggaaatagagaacaac |
53495077 |
T |
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| Q |
223 |
aattttacctttggtttgacccaactgcagcttttcacacata |
265 |
Q |
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|||| | || |||||||| |||||||| | |||||||||||| |
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| T |
53495078 |
aattccatctatggtttgatccaactgctgattttcacacata |
53495120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 262
Target Start/End: Original strand, 53502074 - 53502213
Alignment:
| Q |
124 |
tgggatgagattgactttgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtgtt-agccaaggcaaaggtaacagagagcaac |
222 |
Q |
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||||||||||| |||| |||||| | |||||| | |||||||| || |||||||||||||| ||||| || || ||||||||||| ||||| || |||| |
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| T |
53502074 |
tgggatgagatagactatgaatttctaggaaatgtaagtggtgaaccatacatccttcacactaatgttttcagtcaaggcaaaggaaacagggaacaac |
53502173 |
T |
|
| Q |
223 |
aattttacctttggtttgacccaactgcagcttttcacac |
262 |
Q |
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|||| || || |||||||||||| | || | ||||||||| |
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| T |
53502174 |
aattctatctatggtttgacccagcagctgattttcacac |
53502213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 95 - 262
Target Start/End: Original strand, 37188542 - 37188710
Alignment:
| Q |
95 |
taatgcagctgtcatcaaaaggaggtgcatgggatgagattgactttgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtg-t |
193 |
Q |
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|||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||| | |
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| T |
37188542 |
taattcagctatcatcaaaaggtggtgcatgggatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtt |
37188641 |
T |
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| Q |
194 |
tagccaaggcaaaggtaacagagagcaacaattttacctttggtttgacccaactgcagcttttcacac |
262 |
Q |
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||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |
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| T |
37188642 |
tagccaaggaaaaggtaacagagagcaacaattctacctatggtttgacccaactgcagattttcacac |
37188710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 38214472 - 38214351
Alignment:
| Q |
127 |
gatgagattgactttgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtgttagc-caaggcaaaggtaacagagagcaacaat |
225 |
Q |
| |
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||||| ||||| ||||| ||||| |||||| | ||||| ||||||||||| || ||||| || ||||| | ||||||||||| |||||||| ||||||| |
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| T |
38214472 |
gatgaaattgattttgagttcttaggaaatgttagtggcgatccttacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaat |
38214373 |
T |
|
| Q |
226 |
tttacctttggtttgacccaac |
247 |
Q |
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| ||||| ||||| |||||||| |
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| T |
38214372 |
tctacctctggttcgacccaac |
38214351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 38218691 - 38218570
Alignment:
| Q |
127 |
gatgagattgactttgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtgttagc-caaggcaaaggtaacagagagcaacaat |
225 |
Q |
| |
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||||| ||||| ||||| ||||| |||||| | ||||| ||||||||||| || ||||| || ||||| | ||||||||||| |||||||| ||||||| |
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| T |
38218691 |
gatgaaattgattttgagttcttaggaaatgttagtggcgatccttacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaat |
38218592 |
T |
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| Q |
226 |
tttacctttggtttgacccaac |
247 |
Q |
| |
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| T |
38218591 |
tctacctctggttcgacccaac |
38218570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 42991063 - 42991172
Alignment:
| Q |
133 |
attgactttgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtgttagc-caaggcaaaggtaacagagagcaacaattttacc |
231 |
Q |
| |
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||||| ||||| |||||||||||| | || ||| |||||||||| || ||||| || ||||| | ||||||||||| |||||||| |||||||| |||| |
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| T |
42991063 |
attgattttgagttcttgggaaatgttagcggtaatccttacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacc |
42991162 |
T |
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| Q |
232 |
tttggtttga |
241 |
Q |
| |
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| |||||||| |
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|
| T |
42991163 |
tctggtttga |
42991172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 261
Target Start/End: Original strand, 43347368 - 43347431
Alignment:
| Q |
198 |
caaggcaaaggtaacagagagcaacaattttacctttggtttgacccaactgcagcttttcaca |
261 |
Q |
| |
|
||||| ||||| | |||||||||||||||| |||| ||||||||||||||||| | |||||||| |
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|
| T |
43347368 |
caaggaaaagggagcagagagcaacaatttcacctctggtttgacccaactgctgattttcaca |
43347431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 33449599 - 33449645
Alignment:
| Q |
213 |
agagagcaacaattttacctttggtttgacccaactgcagcttttca |
259 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| | |||||| |
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| T |
33449599 |
agagagcaacaattttatctttggtttgacccaactgctgattttca |
33449645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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