View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_79 (Length: 256)
Name: NF0243_low_79
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 33532118 - 33532230
Alignment:
| Q |
135 |
gggataagctagagaaagtatgatatcatataacaatacaatacaacctgcagtgcatatgcatacatccaccagttttctggacatgcattgagcattt |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33532118 |
gggataagctagagaaagtatgatatcatataacaatacaatacaacctgcagtgcatatgcatacatccaccagttttctggacatgcattgagcattt |
33532217 |
T |
|
| Q |
235 |
tggacatctctgc |
247 |
Q |
| |
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||||||||||||| |
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| T |
33532218 |
tggacatctctgc |
33532230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 33532014 - 33532051
Alignment:
| Q |
31 |
tgaaaaccacacctgaaaaagataaaagcattgagtcg |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
33532014 |
tgaaaaccacacctgaaaaagataaaagcattgagtcg |
33532051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 135 - 247
Target Start/End: Complemental strand, 16869229 - 16869117
Alignment:
| Q |
135 |
gggataagctagagaaagtatgatatcatataacaatacaatacaacctgcagtgcatatgcatacatccaccagttttctggacatgcattgagcattt |
234 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16869229 |
gggataagctagagaaagtatgatatcatataacaatacaatacaacctgcagtgcatatgcatacatccaccagttttctggacatgcattgagcattt |
16869130 |
T |
|
| Q |
235 |
tggacatctctgc |
247 |
Q |
| |
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||||||||||||| |
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| T |
16869129 |
tggacatctctgc |
16869117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 16869333 - 16869296
Alignment:
| Q |
31 |
tgaaaaccacacctgaaaaagataaaagcattgagtcg |
68 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
16869333 |
tgaaaaccacacctgaaaaagataaaagcattgagtcg |
16869296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 25027585 - 25027515
Alignment:
| Q |
177 |
acaacctgcagtgcatatgcatacatccaccagttttctggacatgcattgagcattttggacatctctgc |
247 |
Q |
| |
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||||||||||| |||| || |||||||||| || ||||||||||||| |||||||| |||||||||||| |
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| T |
25027585 |
acaacctgcagcgcatgtgttcacatccaccatttctctggacatgcatagagcatttgggacatctctgc |
25027515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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