View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_81 (Length: 252)
Name: NF0243_low_81
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_81 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 239675 - 239459
Alignment:
| Q |
23 |
acatcatcaccctctttaacaagaaacgtcgttagagtggaacaacttattcagggattgcaccaatgcttggtgtgttggctcttcccacatttttctc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
239675 |
acatcatcaccctctttaacaagaaacgtcgttagagtggaacaacttattcagggattgcaccaatgcttggtttgctggctcttcccacatttttctc |
239576 |
T |
|
| Q |
123 |
gtgtttcttgtgttccctacttctaaaccgatcttccaacacttgcatccatgttccactttttcgcaactcattcatttaacaagcaaatgttttgtct |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
239575 |
gtgtttcttgtgttccctacttctaaaccgatcttccaacacttgcatccatgttccactttttcgcaactcattcatctaacaagcaaatgttttgtct |
239476 |
T |
|
| Q |
223 |
tattcctatgttgttca |
239 |
Q |
| |
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||||||||||| ||||| |
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| T |
239475 |
tattcctatgtcgttca |
239459 |
T |
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