View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_82 (Length: 252)
Name: NF0243_low_82
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_82 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 49690441 - 49690647
Alignment:
| Q |
1 |
tggtactcattttccaagtcaactagcgtgtcaatttgcttcgaagaatatatttatgtcgtgcaaattaaaagtgtggaacaaattgtttaacacaatt |
100 |
Q |
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| T |
49690441 |
tggtactcattttccaagtcaactagcgtgtcaatttgcttcaaagaatatatttatgtcgtgcaaattaaaagtgtggaacaaattgtttaacacaatt |
49690540 |
T |
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| Q |
101 |
gaatggctttagtttatgttttacattttaggttccttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49690541 |
gaatggctttagtttatgttttacattttaggttccttttgttctctcatttgactgtgttactgctacttgtcttaactaggaaaggaaatggacacag |
49690640 |
T |
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| Q |
201 |
tgatgat |
207 |
Q |
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|| |||| |
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| T |
49690641 |
tggtgat |
49690647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 49686195 - 49686387
Alignment:
| Q |
9 |
attttccaagtcaacta--gcgtgtcaatttgcttcgaagaatatatttatgtcgtgcaaattaa-aagtgtggaacaaattgtttaacacaattgaatg |
105 |
Q |
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| T |
49686195 |
attttccaagtcaactatagcgtgtcaattggcttcaaaggatatatttatgttgtgcaaattaacaagtgtggaacaaattgtgaaacagaataggatg |
49686294 |
T |
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| Q |
106 |
gctttagtttatgttttacattttaggttccttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatg |
205 |
Q |
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| T |
49686295 |
gctctagttcatgcactacat---------cttttgttctctcatttgactgtgttactgctacttgtcttaactagtaaaggaaatggacacagtgatg |
49686385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 49678949 - 49679020
Alignment:
| Q |
136 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49678949 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgat |
49679020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 49678783 - 49678885
Alignment:
| Q |
1 |
tggtactcattttccaagtcaactagcgtgtcaatttgcttcgaagaatatatttatgtcgtgcaaatta--aaagtgtggaacaaattgtttaacacaa |
98 |
Q |
| |
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||||||||||||| ||||||||||| |||||||||| ||| |||| |||| |||||| | ||||||| |||||||||||||||||| | ||||||| |
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| T |
49678783 |
tggtactcattttacaagtcaactaacgtgtcaattggctcagaaggatatctttatgcactacaaattaagaaagtgtggaacaaattgataaacacaa |
49678882 |
T |
|
| Q |
99 |
ttg |
101 |
Q |
| |
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||| |
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|
| T |
49678883 |
ttg |
49678885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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