View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0243_low_86 (Length: 251)
Name: NF0243_low_86
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0243_low_86
[» ] scaffold0031 (1 HSPs)
Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 1775979 - 1776198
Alignment:
Q
30
ccacacatgttgtatattgttgtgcccagtccccatagcagtaacgaattaaattgtggctttaaacttgaatttcagggtcagaattaataaacaaaac
129
Q
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
1775979
ccacacatgttgtatattgttgtgtccagcccccatagcagtaacgaattaaattgtggctttaaacttgaatttcagggtcagaattaataaacaaaac
1776078
T
Q
130
catccagaaaactattctcaacgcaggtccacccaagaaaacatcagaattaaaattgaaaaaacggcacataacaaagtggttgttcagcatggtggta
229
Q
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
T
1776079
catccagaaaactattctcaacataggtccacccaagaaaatatcagaattaaaattgaaaaaacggcacataacaaagtggttgttcagcatggtggca
1776178
T
Q
230
caagagggtcgagatggaaa
249
Q
|||||||| | |||||||||
T
1776179
caagagggccaagatggaaa
1776198
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 51047814 - 51047609
Alignment:
Q
30
ccacacatgttgtatattgttgtgcccagtccccatagcagtaacgaattaaattgtggctttaaacttgaatttcagggtcagaattaataaacaaaac
129
Q
||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
T
51047814
ccacacatgttgtatattgttgtccccagcccccatagttgtaacaaattaaattgtggctttaaacttgaatttcagggtcataattaataaacaaaat
51047715
T
Q
130
catccagaaaactattctcaacgcaggtccacccaagaaaacatcagaattaaaattgaaaaaacggcacataacaaagtggttgttcagcatggtggta
229
Q
|||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
T
51047714
catccaaaaaattattctcaacgcaggtccacccaagaaaagatcagaattaaaattgaaaaaacagcacataacaaagtggttgttcagcatggtggca
51047615
T
Q
230
caagag
235
Q
||||||
T
51047614
caagag
51047609
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0031 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 106632 - 106724
Alignment:
Q
30
ccacacatgttgtatattgttgtgcccagtccccatagcagtaacgaattaaattgtggctttaaacttgaatttcagggtcagaattaataaa
123
Q
||||||||||||||||| ||||| || || |||||| ||| ||||||||||||| | |||||||||||||||||||| || ||||||||||||
T
106632
ccacacatgttgtatatcgttgtcccaag-ccccatggcattaacgaattaaatgggggctttaaacttgaatttcacagtaagaattaataaa
106724
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 10365460 - 10365514
Alignment:
Q
89
ctttaaacttgaatttcagggtcagaattaataaacaaaaccatccagaaaactat
144
Q
|||||||||||||||| | |||||| |||||||| | |||||||||||||||||||
T
10365460
ctttaaacttgaattttacggtcagtattaataagc-aaaccatccagaaaactat
10365514
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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