View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_91 (Length: 251)
Name: NF0243_low_91
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_91 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 12893115 - 12892895
Alignment:
| Q |
1 |
tagtttaactagataagctgtagtacttatttcaactagaggctaccatcaaagttgttaaatatgggctacgtagtgattttgatcaaatcttaaatgg |
100 |
Q |
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| T |
12893115 |
tagttcaactagataagctctagtacttatttcaactagaggctaccatcaaagttgttaaatatgggctacgttgtgattttgatcaaatcttaaatgg |
12893016 |
T |
|
| Q |
101 |
taaatgttcgaaggaaaatgtcaatgaagtcatatagaactagacttgctagtgattgtgttaggccttatataagccttaaatggcttatcattttcag |
200 |
Q |
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| T |
12893015 |
taaatgttcgaaggaaaatgtcaatgaagtcatatagaactagacctgctagtgattgtgttaggccttatttaagccttaaatgtcttatcattttca- |
12892917 |
T |
|
| Q |
201 |
acactagatttgagttttcaaa |
222 |
Q |
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| T |
12892916 |
acacttgatttgagttttcaaa |
12892895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 14634022 - 14633958
Alignment:
| Q |
157 |
tgtgttaggccttatataagccttaaatggcttatcattttcagacactagatttgagttttcaaa |
222 |
Q |
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| T |
14634022 |
tgtgttaggccttatttaagccttaaatgtcttatcattttca-acacttgatttgagttttcaaa |
14633958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 14639663 - 14639596
Alignment:
| Q |
157 |
tgtgttaggccttatataagccttaaatggc---ttatcattttcagacactagatttgagttttcaaa |
222 |
Q |
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| T |
14639663 |
tgtgttaggccttatttaagccttaaatggcttattatcattttca-acacttgatttgagttttcaaa |
14639596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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