View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0243_low_99 (Length: 241)
Name: NF0243_low_99
Description: NF0243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0243_low_99 |
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Alignment Details
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 7814378 - 7814277
Alignment:
| Q |
22 |
ttatgggattcaaggtgtggaaatccatatgaagattaatttcctcaacacgacgctgtttcgccgcttcaaaccatgcactgaagatgtgactatattg |
121 |
Q |
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| T |
7814378 |
ttatgggattcaaggtgtggaaatccatatgaagattaatttcctcaacactacgctgttttgcggcttcaatccatgcattgaatatgcgactatcttg |
7814279 |
T |
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| Q |
122 |
ct |
123 |
Q |
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|| |
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| T |
7814278 |
ct |
7814277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 7860307 - 7860208
Alignment:
| Q |
12 |
gagatgaaagttatgggattcaaggtgtggaaatccatatgaagattaatttcctcaacacgacgctgtttcgccgcttcaaaccatgcactgaagatgt |
111 |
Q |
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||||||||| | ||||||||||| || ||||||| || || |||| | |||||||||| |||||||||| || ||||||| ||||||| ||||||||| |
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| T |
7860307 |
gagatgaaaataatgggattcaatgtttggaaatacagatttagatgtaattcctcaacatgacgctgttttgcggcttcaagccatgcattgaagatgt |
7860208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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