View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0244_high_1 (Length: 798)
Name: NF0244_high_1
Description: NF0244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0244_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 591; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 31 - 791
Target Start/End: Complemental strand, 10333438 - 10332692
Alignment:
| Q |
31 |
tgaatagttttggatcaacactttcttatttttcgtttacttcatttctgatattaatatatgttggagtggtagctgaattgcaatccaacatattgat |
130 |
Q |
| |
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|||||||| |||||||||||||||||| |||||| || ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
10333438 |
tgaatagtgttggatcaacactttcttctttttctttcacttcatttatgatattaatat--gtt--agtggtagctgaattgcaatccaacatattga- |
10333344 |
T |
|
| Q |
131 |
ccagatattgaacct-ttcagaatctcagtagcatacttggtctgatgaagtatcaagccttttgaggttttgagaatctccattcgtaagaaatatgca |
229 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| |
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| T |
10333343 |
-----------acctcttcaggatctcagtagcatacttggtctgatgaagtatcaagccttttgaggttctgagaatctctattcctaagaaatatgca |
10333255 |
T |
|
| Q |
230 |
agatt-cctagaccagccatttcaaattctgacttcatgactgatttaaactcttcaatatcttgaactttgcttccagtcaacataaaatcatccacat |
328 |
Q |
| |
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|| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
10333254 |
agctttcctagaccaatcatttcaaattctgacttcatgactgatttaaactcttcaatatcttgaatttatcttccagtcaacataaaatcatccacat |
10333155 |
T |
|
| Q |
329 |
acaagcatacgataagtaaactagtctcttctcttccttttacatacactccatgctcaacaatgcatttcttaaatccttctttcttaaagcatttgtc |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10333154 |
acaagcatacgataagtaaactagtctcttctcttccttttacatacactccatgctcaacaatgcatttcttaaatccttctttcttaaagcatttgtc |
10333055 |
T |
|
| Q |
429 |
aannnnnnnattctaggccctaggttctcatttcaagctatatagagccttgtttagtttgaacactctatcttctttccctttgattcagaaaggctga |
528 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10333054 |
aatttttttattctaggccctaggttctcatttcaagctatatagagccttgtttagtttgaacactctatcttctttccctttgattcagaaaggctga |
10332955 |
T |
|
| Q |
529 |
ttttacatctaagtgatatagtagccatgctttgcttgttgctatactacaatgactaacctgatggtttcatgtcatgcaactggtgagaaaactttag |
628 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10332954 |
ttttacatctaagtgatatagtagccatgctttgcttgttgctatactacaatgactaacctgatggtttcatgtcatgcaactggtgagaaaactttag |
10332855 |
T |
|
| Q |
629 |
tatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttcacaatcttcccttcaaggttcaatttcagcttaaaaaccca |
728 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10332854 |
tatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttcacaatcttcccttcaaggttcaatttcagcttaaaaaccca |
10332755 |
T |
|
| Q |
729 |
ttttaaatcaattgctttctttccaccaggaagcttgatcagttccatgtttgattcatctca |
791 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
10332754 |
tttgaaatcaattgctttctttccaccaggaagcttgattagttccatgtttgattcttctca |
10332692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 606 - 751
Target Start/End: Original strand, 6372497 - 6372642
Alignment:
| Q |
606 |
tgcaactggtgagaaaactttagtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttcacaatcttcccttcaagg |
705 |
Q |
| |
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||||| |||||||||||||| ||| || | ||| ||||| ||| ||||||| || |||| ||||| || ||||| || |||||||||||||| ||| || |
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| T |
6372497 |
tgcaattggtgagaaaacttcagtgtaatcaaagccttcattctataagaaacctctagccacaagtcttgctttttgattcacaatcttcccgtcaggg |
6372596 |
T |
|
| Q |
706 |
ttcaatttcagcttaaaaacccattttaaatcaattgctttctttc |
751 |
Q |
| |
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|||||||| | ||| || |||||||| | ||| ||||||||||||| |
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| T |
6372597 |
ttcaatttaaacttgaagacccatttgacatctattgctttctttc |
6372642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 589 - 749
Target Start/End: Complemental strand, 14639885 - 14639725
Alignment:
| Q |
589 |
ctgatggtttcatgtcatgcaactggtgagaaaactttagtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttca |
688 |
Q |
| |
|
|||||||||||||||| || |||||||||||| |||| |||||| | ||| ||||||||| ||||| || |||| ||||| || ||||||||||||| |
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| T |
14639885 |
ctgatggtttcatgtcttggaactggtgagaacacttcagtataatcaaagccttccttcttcaagaaaactctagccacaagtctagctttgtgcttca |
14639786 |
T |
|
| Q |
689 |
caatcttcccttcaaggttcaatttcagcttaaaaacccattttaaatcaattgctttctt |
749 |
Q |
| |
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|||||||||||||| | |||||||||| |||||| |||||||| | ||| ||||||||||| |
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| T |
14639785 |
caatcttcccttcaggattcaatttcaacttaaagacccatttaacatctattgctttctt |
14639725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 152 - 331
Target Start/End: Complemental strand, 33685066 - 33684886
Alignment:
| Q |
152 |
atctcagtagcatacttggtctgatgaagtatcaagccttttgaggttttgagaatctccattcgtaagaaatatgcaagatt-cctagaccagccattt |
250 |
Q |
| |
|
|||||| ||||||| ||||| ||||| |||||||| || ||||||||| | ||||| ||||| | ||| ||||||||||| || |||| | ||| ||||| |
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| T |
33685066 |
atctcaatagcatatttggtttgatggagtatcaatccctttgaggttctaagaatttccatgcctaataaatatgcaagcttacctaaatcagtcattt |
33684967 |
T |
|
| Q |
251 |
caaattctgacttcatgactgatttaaactcttcaatatcttgaactttgcttccagtcaacataaaatcatccacataca |
331 |
Q |
| |
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|||| || ||||| ||||||||||| || |||| ||| |||| | ||||||||||| | ||||| |||||| ||||||| |
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| T |
33684966 |
caaactcagactttatgactgatttgaaatctttaatgtcttacatgttgcttccagttagcataagatcatctacataca |
33684886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 152 - 331
Target Start/End: Complemental strand, 33702120 - 33701940
Alignment:
| Q |
152 |
atctcagtagcatacttggtctgatgaagtatcaagccttttgaggttttgagaatctccattcgtaagaaatatgcaagatt-cctagaccagccattt |
250 |
Q |
| |
|
|||||| ||||||| ||||| ||||| |||||||| || ||||||||| | ||||| ||||| | ||| ||||||||||| || |||| | ||| ||||| |
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| T |
33702120 |
atctcaatagcatatttggtttgatggagtatcaatccctttgaggttctaagaatttccatgcctaataaatatgcaagcttacctaaatcagtcattt |
33702021 |
T |
|
| Q |
251 |
caaattctgacttcatgactgatttaaactcttcaatatcttgaactttgcttccagtcaacataaaatcatccacataca |
331 |
Q |
| |
|
|||| || ||||| ||||||||||| || |||| ||| |||| | ||||||||||| | ||||| |||||| ||||||| |
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|
| T |
33702020 |
caaactcagactttatgactgatttgaaatctttaatgtcttacatgttgcttccagttagcataagatcatctacataca |
33701940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 516
Target Start/End: Complemental strand, 33684740 - 33684702
Alignment:
| Q |
478 |
ttgtttagtttgaacactctatcttctttccctttgatt |
516 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
33684740 |
ttgttcagtctgaacactctatcttctttccctttgatt |
33684702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 516
Target Start/End: Complemental strand, 33701794 - 33701756
Alignment:
| Q |
478 |
ttgtttagtttgaacactctatcttctttccctttgatt |
516 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
33701794 |
ttgttcagtctgaacactctatcttctttccctttgatt |
33701756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 589 - 773
Target Start/End: Original strand, 12196483 - 12196666
Alignment:
| Q |
589 |
ctgatggtttcatgtcatgcaactggtgagaaaactttagtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttca |
688 |
Q |
| |
|
||||| |||||||||| |||| ||||||||||||||||||| || | ||| ||||||||| | || || || |||| | |||||| |||| ||| |||| |
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|
| T |
12196483 |
ctgatagtttcatgtcttgcatctggtgagaaaactttagtgtaatcaaaaccttccttcta-aataaacctctagccaaaagccttgcttcgtgattca |
12196581 |
T |
|
| Q |
689 |
caatcttcccttcaaggttcaatttcagcttaaaaacccattttaaatcaattgctttctttccaccaggaagcttgatcagttc |
773 |
Q |
| |
|
||||||||||||| | || ||||| | ||| |||||| |||||| ||| ||||| || |||||| | ||||||| |||||||| |
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|
| T |
12196582 |
caatcttcccttcttgattaaattttaacttgaaaaccaattttatatctattgccttttttccatctcgaagctttatcagttc |
12196666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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