View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0244_high_11 (Length: 210)
Name: NF0244_high_11
Description: NF0244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0244_high_11
Alignment Details
Target: chr2 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 24169590 - 24169439
Alignment:
Q
1
atcttgaatggaagcattttgagtgtctagtctttcattgacttccttaaactttagatcttgagcatcaaacctttcgttgatttccttaaattgcacg
100
Q
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
T
24169590
atcttgaatggaagcattttgagagtctagtctttcattgacttccttaaactttagatcttgagcatcaaacctttcgttgatttccttgaattgcatg
24169491
T
Q
101
tctcgagcatcaaatttttgagacatgaacttcttgagatcctttataccca
152
Q
||| |||||||||||||||||||| |||||||||| ||||||||||||||||
T
24169490
tcttgagcatcaaatttttgagacgtgaacttcttaagatcctttataccca
24169439
T
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Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 11583805 - 11583967
Alignment:
Q
1
atcttgaatggaagcattttgagtgtctagtctttcattgacttccttaaactttagatcttgagcatcaaacctttcgttgatttccttaaattgcacg
100
Q
|||||||||||| |||||||||| |||| |||||||| |||||| |||||||||| |||||| ||||||||||||| |||||||||||| || |||| |
T
11583805
atcttgaatggatgcattttgagaatctattctttcatggacttctttaaactttaaatcttgcgcatcaaaccttttgttgatttccttgaactgcatg
11583904
T
Q
101
tctcgagcatcaaatttttgagacatgaacttcttgagatcctttatacccaccaagacttca
163
Q
||| |||||||||| |||||||||||| ||||||| ||||||||||| || | ||||||||||
T
11583905
tcttgagcatcaaacttttgagacatgtacttctttagatcctttatccctaacaagacttca
11583967
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 21216685 - 21216554
Alignment:
Q
4
ttgaatggaagcattttgagtgtctagtctttcattgacttccttaaactttagatcttgagcatcaaacctttcgttgatttccttaaattgcacgtct
103
Q
|||||||||| ||||||||| ||||||| | ||||| || |||||||||| || |||||||||||||||| |||||| || || || || | ||||
T
21216685
ttgaatggaaacattttgagaatctagtcatgtattgatatcattaaactttaagtcctgagcatcaaaccttttgttgatatctttgaactgtaagtct
21216586
T
Q
104
cgagcatcaaatttttgagacatgaacttctt
135
Q
|||||||||| |||||||||||| |||||||
T
21216585
tgagcatcaaacttttgagacatgtacttctt
21216554
T
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Target Overview ] [
Alignment Overview ]
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