View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0244_high_4 (Length: 459)
Name: NF0244_high_4
Description: NF0244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0244_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 29 - 451
Target Start/End: Original strand, 2877235 - 2877657
Alignment:
| Q |
29 |
aaatgatacgaccttgagtttagaaaaaccactagaagaggggttttggccaccttcgcccttttgcttaagaatcttgtttaatcctggaaggaatacc |
128 |
Q |
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| T |
2877235 |
aaatgatacgaccttgagtttagaaaaaccactagaagaggggttttggccacctttgcccttttgcttaagaatcttgtttaatcctggaaggaatacc |
2877334 |
T |
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| Q |
129 |
ctgaatttgcaatgtgtcccccactacgaaaaattgtttcttcaacaaaacaaatatgcacaaaacctgaggcagtaagctaatacaataataaagatac |
228 |
Q |
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| T |
2877335 |
ctgaatttgcaatgtgtcccccactacgaaaagttgtttcttcaacaaaacaaatatgcacaaaacctgaggcagtaagctaatacaataataaagatac |
2877434 |
T |
|
| Q |
229 |
attcttctggacaatgggaaatctctgtaaacacattatcatttttacaccactaaataaactacgagaattcgcccaacacacgctgagttacttaaat |
328 |
Q |
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| T |
2877435 |
atccttctggacaatgggaaatctctgtaaacacattatcatttttacaccactaaataaactacgagaattcgcccaacacacgctgagttacttaaat |
2877534 |
T |
|
| Q |
329 |
caggagttgttcaagttctgaaaaagctctggaagatgggcgttagtcagcttggtcctcttggtgatttcgttcttctttttcttaggtttaggcttgg |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2877535 |
caggagttgttcaagttctgaaaaagctctggaagatgggcgttagtcagcttggtcctcttggtgatttcgttcttctttttcttaggtttaggcttgg |
2877634 |
T |
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| Q |
429 |
atgaaatgccttccatctgtgct |
451 |
Q |
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| T |
2877635 |
atgaaatgccttccatttgtgct |
2877657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 40706910 - 40706845
Alignment:
| Q |
343 |
gttctgaaaaagctctggaagatgggcgttagtcagcttggtcctcttggtgatttcgttcttctt |
408 |
Q |
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||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||| |||||||| |
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| T |
40706910 |
gttctgaaaaagctccggaagatgggcattggtcagcttggttctcttggtgatttcattcttctt |
40706845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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