View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0244_low_12 (Length: 210)
Name: NF0244_low_12
Description: NF0244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0244_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 24169590 - 24169439
Alignment:
| Q |
1 |
atcttgaatggaagcattttgagtgtctagtctttcattgacttccttaaactttagatcttgagcatcaaacctttcgttgatttccttaaattgcacg |
100 |
Q |
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| T |
24169590 |
atcttgaatggaagcattttgagagtctagtctttcattgacttccttaaactttagatcttgagcatcaaacctttcgttgatttccttgaattgcatg |
24169491 |
T |
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| Q |
101 |
tctcgagcatcaaatttttgagacatgaacttcttgagatcctttataccca |
152 |
Q |
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| T |
24169490 |
tcttgagcatcaaatttttgagacgtgaacttcttaagatcctttataccca |
24169439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 11583805 - 11583967
Alignment:
| Q |
1 |
atcttgaatggaagcattttgagtgtctagtctttcattgacttccttaaactttagatcttgagcatcaaacctttcgttgatttccttaaattgcacg |
100 |
Q |
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|||||||||||| |||||||||| |||| |||||||| |||||| |||||||||| |||||| ||||||||||||| |||||||||||| || |||| | |
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| T |
11583805 |
atcttgaatggatgcattttgagaatctattctttcatggacttctttaaactttaaatcttgcgcatcaaaccttttgttgatttccttgaactgcatg |
11583904 |
T |
|
| Q |
101 |
tctcgagcatcaaatttttgagacatgaacttcttgagatcctttatacccaccaagacttca |
163 |
Q |
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||| |||||||||| |||||||||||| ||||||| ||||||||||| || | |||||||||| |
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| T |
11583905 |
tcttgagcatcaaacttttgagacatgtacttctttagatcctttatccctaacaagacttca |
11583967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 21216685 - 21216554
Alignment:
| Q |
4 |
ttgaatggaagcattttgagtgtctagtctttcattgacttccttaaactttagatcttgagcatcaaacctttcgttgatttccttaaattgcacgtct |
103 |
Q |
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|||||||||| ||||||||| ||||||| | ||||| || |||||||||| || |||||||||||||||| |||||| || || || || | |||| |
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| T |
21216685 |
ttgaatggaaacattttgagaatctagtcatgtattgatatcattaaactttaagtcctgagcatcaaaccttttgttgatatctttgaactgtaagtct |
21216586 |
T |
|
| Q |
104 |
cgagcatcaaatttttgagacatgaacttctt |
135 |
Q |
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|||||||||| |||||||||||| ||||||| |
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| T |
21216585 |
tgagcatcaaacttttgagacatgtacttctt |
21216554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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