View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0244_low_2 (Length: 726)

Name: NF0244_low_2
Description: NF0244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0244_low_2
NF0244_low_2
[»] chr6 (10 HSPs)
chr6 (250-698)||(27156825-27157272)
chr6 (1-252)||(27156551-27156798)
chr6 (1-252)||(97062-97309)
chr6 (1-149)||(10895101-10895249)
chr6 (13-147)||(15667190-15667324)
chr6 (1-100)||(6059909-6060008)
chr6 (250-354)||(96931-97035)
chr6 (1-60)||(26092576-26092636)
chr6 (191-252)||(17749896-17749957)
chr6 (5-39)||(17749961-17749995)
[»] chr1 (13 HSPs)
chr1 (1-472)||(51065097-51065582)
chr1 (1-226)||(27132859-27133080)
chr1 (1-100)||(3288219-3288318)
chr1 (1-148)||(11052589-11052736)
chr1 (1-76)||(47074534-47074609)
chr1 (1-100)||(4692598-4692695)
chr1 (5-249)||(25536986-25537226)
chr1 (250-344)||(11052838-11052932)
chr1 (361-415)||(27132624-27132678)
chr1 (272-354)||(27132710-27132792)
chr1 (184-252)||(11052743-11052811)
chr1 (29-101)||(44316145-44316217)
chr1 (305-354)||(25536854-25536902)
[»] chr4 (13 HSPs)
chr4 (1-252)||(55404834-55405081)
chr4 (1-122)||(16400990-16401111)
chr4 (5-100)||(27599193-27599288)
chr4 (1-149)||(14461541-14461689)
chr4 (1-226)||(14797383-14797603)
chr4 (1-100)||(53816255-53816354)
chr4 (8-97)||(43335452-43335541)
chr4 (1-149)||(37466038-37466186)
chr4 (1-76)||(44504730-44504805)
chr4 (26-77)||(24536072-24536123)
chr4 (266-354)||(14797684-14797772)
chr4 (250-354)||(55404703-55404807)
chr4 (83-149)||(2664957-2665023)
[»] chr3 (16 HSPs)
chr3 (1-252)||(8425356-8425603)
chr3 (1-226)||(2736428-2736649)
chr3 (1-226)||(22126548-22126769)
chr3 (1-205)||(40925495-40925695)
chr3 (1-100)||(54788816-54788915)
chr3 (1-149)||(22509675-22509823)
chr3 (1-100)||(14195355-14195454)
chr3 (1-149)||(39621919-39622067)
chr3 (1-61)||(19972061-19972121)
chr3 (1-100)||(21496647-21496746)
chr3 (266-354)||(2736259-2736347)
chr3 (266-354)||(22126850-22126938)
chr3 (266-354)||(40925305-40925393)
chr3 (250-344)||(8425630-8425724)
chr3 (368-414)||(40925220-40925266)
chr3 (368-415)||(2736173-2736220)
[»] chr7 (14 HSPs)
chr7 (1-252)||(37126437-37126683)
chr7 (1-225)||(8363567-8363787)
chr7 (1-226)||(31421797-31422018)
chr7 (1-149)||(41596620-41596768)
chr7 (7-145)||(18294989-18295127)
chr7 (1-90)||(19340943-19341032)
chr7 (266-354)||(31421628-31421716)
chr7 (1-45)||(10509285-10509329)
chr7 (361-415)||(8363311-8363365)
chr7 (13-99)||(33532041-33532127)
chr7 (266-354)||(8363397-8363485)
chr7 (5-45)||(10511183-10511223)
chr7 (368-415)||(31421542-31421589)
chr7 (1-43)||(25156580-25156622)
[»] chr2 (10 HSPs)
chr2 (1-252)||(5088487-5088733)
chr2 (1-195)||(9844860-9845050)
chr2 (1-149)||(43525226-43525374)
chr2 (155-252)||(41317916-41318013)
chr2 (19-148)||(12055134-12055263)
chr2 (8-97)||(5885471-5885560)
chr2 (1-76)||(41318093-41318168)
chr2 (1-62)||(17738125-17738191)
chr2 (266-354)||(5088356-5088444)
chr2 (368-415)||(5088270-5088317)
[»] chr5 (12 HSPs)
chr5 (1-226)||(22270388-22270609)
chr5 (1-196)||(35635112-35635306)
chr5 (2-145)||(37259067-37259209)
chr5 (1-140)||(38395173-38395315)
chr5 (1-149)||(14009470-14009618)
chr5 (1-145)||(23121072-23121216)
chr5 (1-77)||(19676984-19677060)
chr5 (1-146)||(28313286-28313431)
chr5 (1-77)||(19663169-19663245)
chr5 (266-354)||(22270690-22270778)
chr5 (1-33)||(19647027-19647059)
chr5 (368-415)||(22270817-22270864)
[»] chr8 (13 HSPs)
chr8 (6-252)||(32382012-32382250)
chr8 (6-252)||(32435967-32436205)
chr8 (1-226)||(33363520-33363740)
chr8 (1-226)||(42809457-42809678)
chr8 (1-252)||(18427455-18427694)
chr8 (1-149)||(12868401-12868549)
chr8 (1-84)||(20098937-20099020)
chr8 (1-45)||(33236611-33236655)
chr8 (368-415)||(33363265-33363312)
chr8 (266-344)||(33363361-33363439)
chr8 (357-415)||(42809202-42809260)
chr8 (305-344)||(18427346-18427385)
chr8 (308-354)||(42809288-42809334)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-140)||(11932-12074)
[»] scaffold0005 (2 HSPs)
scaffold0005 (1-226)||(42128-42348)
scaffold0005 (266-354)||(41959-42047)
[»] scaffold0129 (1 HSPs)
scaffold0129 (1-146)||(7626-7771)
[»] scaffold0026 (1 HSPs)
scaffold0026 (69-124)||(92373-92428)


Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 250 - 698
Target Start/End: Original strand, 27156825 - 27157272
Alignment:
Q  250 tgattggcgaagatcgaaaagaaaatgttgaagataaaatggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaatagtc 349  Q
    ||||||||||  ||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  27156825 tgattggcgagcatcaaaaagaaaatgttgaagataaaatgaaaaattagtcgtatcttga-cactaaaattcatgtgataatatttttcaacaatagta 27156923  T
Q  350 catatttatcatcaggaaacaaagcacgacttagtgtcaacaaatccattgcttgctcagtaaatcagacaacaggggaagagaaaatgaaatgacattg 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||| || |||||||||| |||||||||||||||     
T  27156924 catatttatcatcaggaaacaaagcacgacttagtgtcaacaaatttattgcttgctcactaaatcagaaaaaaggggaagagcaaatgaaatgacatta 27157023  T
Q  450 ataattttcatattaattgaaggttgatatggcaattttcaaggcatg-aaaaattattattttttaagataagatggggtggctgtggctcccccttac 548  Q
    |||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| || |    
T  27157024 ataattttcatattaattgaaggttgttatggtaattttcaaagcatgaaaaaattattattttttaagataagatggggtggccgtggctcccctttgc 27157123  T
Q  549 caccgcgtggttttgccaatagatttgacaaatatttgtgggatcgatattttttactacttatatattataaattccaccactcaaaaaactttttcct 648  Q
    |||| |||| || ||| | || |||||||||||| |||||| ||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||    
T  27157124 caccccgtgattctgcgagtaaatttgacaaatacttgtggaatcgatattttttac-acctatatattataaattccacccctcaaaaaactttttcct 27157222  T
Q  649 tagaggagccctcaataaactattataaattcatggtagatttaatgtat 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27157223 tagaggagccctcaataaactattataaattcatggtagatttaatgtat 27157272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 27156551 - 27156798
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27156551 catcaataattgactcagaactaatacatgcattaatttccctttaaatgtaaactgacatgttatctgctagaaacccaggtcccatcttgtttctcaa 27156650  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| ||    |||| |||| ||||||||||||||||||||||||||||||||||||||    
T  27156651 cttaggcttaataattttcattgctaaaaaagatctttcatttgtagc----tataaaaacatgaagagtcataataaaacgcaacaacctatcaatcaa 27156746  T
Q  201 gaagtattgattggtttgtacattggtagccaaacatgagcataattcttga 252  Q
    ||||||||  ||||||||| |||||||||||||||||| |||||||||||||    
T  27156747 gaagtattttttggtttgtccattggtagccaaacatgggcataattcttga 27156798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 97309 - 97062
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||| |||||| ||||||| |||||||||||||||||    
T  97309 catcaataattgactcggaactaatagatgcactaatttccctttcaatataaactgacatgctatctgctagatacccagggcccatcttgtttctcaa 97210  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    ||| | ||| ||||||||||||||| ||||| || |||| ||||||||    | |||||||  |||||||||||||||  ||||||||| ||||||||||    
T  97209 cttggacttgataattttcattgctgaaaaatatctttctgttgtggc----tgtagaaactggaagagtcataataaggcgcaacaacttatcaatcaa 97114  T
Q  201 gaagtattgattggtttgtacattggtagccaaacatgagcataattcttga 252  Q
    ||||||||  ||| ||||| || ||| ||||||||||||||| |||||||||    
T  97113 gaagtattctttgttttgtccagtggcagccaaacatgagcacaattcttga 97062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 10895101 - 10895249
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    |||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||  || | |||| ||||||| |||||||||||||||||||    
T  10895101 catcaataattgactcggaattaatagatgcactaatttccctttcaatataaactgacatactaactgctaaaaacccaagtcccatcttgtttctcaa 10895200  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggct 149  Q
    ||||| ||| ||||||||||||||| |||||||| ||||  ||||||||    
T  10895201 cttagacttgataattttcattgctgaaaaagatctttcgattgtggct 10895249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 15667190 - 15667324
Alignment:
Q  13 actcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaacttaggcttaat 112  Q
    |||| |||||||||| |||||||||||||||||  |||||||| | |||| ||||   ||||||||||  ||||||||||||||||||| ||| ||| ||    
T  15667190 actcagaactaatacttgcactaatttccctttcgatataaaccgtcatgctatcatttagaaacccacttcccatcttgtttctcaacctagtcttgat 15667289  T
Q  113 aattttcattgctaaaaaagatatttcagttgtgg 147  Q
    ||| ||||||||| |||| ||| | ||||||||||    
T  15667290 aatcttcattgctgaaaaggatctctcagttgtgg 15667324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 6059909 - 6060008
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||||||| |||||||||||||| ||||||  |||| |||||||| ||||||| |||  |||||||||  |||| ||||||||||||||||    
T  6059909 catcaataattgactcgaaactaatacatgcattaatttttcttttaatataaattgacatgctattggctagaaacttaggttccatcttgtttctcaa 6060008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 250 - 354
Target Start/End: Complemental strand, 97035 - 96931
Alignment:
Q  250 tgattggcgaagatcgaaaagaaaatgttgaagataaaatggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaatagtc 349  Q
    ||||||||||| ||| ||||| |||||| |||||| |||||| || ||  || | || ||||||||||||| |||| |||||||||||| ||||| |||     
T  97035 tgattggcgaacatcaaaaaggaaatgtcgaagatcaaatggcaatttcatcttctcatgatcactaaaatccatgggataatatttttgaacaagagta 96936  T
Q  350 catat 354  Q
    |||||    
T  96935 catat 96931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26092636 - 26092576
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaa-tttccctttaaatataaactgaca 60  Q
    ||||||||| |||||||||||||||| || |||||| ||||||||| ||||||||||||||    
T  26092636 catcaataactgactcggaactaatagatacactaactttccctttcaatataaactgaca 26092576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 17749957 - 17749896
Alignment:
Q  191 tatcaatcaagaagtattgattggtttgtacattggtagccaaacatgagcataattcttga 252  Q
    ||||||||||||||||||   |||||||| |||||| || ||||||| ||||||||||||||    
T  17749957 tatcaatcaagaagtattttatggtttgtccattggcagtcaaacattagcataattcttga 17749896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 17749995 - 17749961
Alignment:
Q  5 aataattgactcggaactaatacatgcactaattt 39  Q
    |||||||||||||||||||||||||||| ||||||    
T  17749995 aataattgactcggaactaatacatgcattaattt 17749961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 3e-84; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 51065097 - 51065582
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || |||||| ||| ||||||||| | ||||||    
T  51065097 catcaataattgactcggaactaatacatgcactaatttccctttcaatataaactgacttgttatctgccagaaactcagatcccatcttttctctcaa 51065196  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    ||||  |||||||||||||||||||  ||||||| ||||| |||||||    | || ||||  ||||||||||||||| || ||||||||||||||||||    
T  51065197 cttatacttaataattttcattgct-gaaaagatctttcaattgtggc----tgtaaaaacaggaagagtcataataagacacaacaacctatcaatcaa 51065291  T
Q  201 gaagtattgattggtttgtacattggtagccaaacatgagcataattct-----------tgattggcgaagatcgaaaagaaaatgttgaagataaaat 289  Q
    ||||| ||  |||||||||  ||||| || |||| |||| ||||||| |           ||||||||||  ||| ||||| |||| |||||||| ||||    
T  51065292 gaagtgttttttggtttgtcaattggcagtcaaatatgaacataatttttgattagttgatgattggcgagcatcaaaaaggaaatattgaagatgaaat 51065391  T
Q  290 ggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaatagtccatatttatcatcaggaaacaaagcacgacttagtgtcaa 389  Q
    || |||||| || | |||||||||||||||||||||  ||||||||||||||||| ||| ||||| |||| || | | ||||| ||| ||||| ||||||    
T  51065392 ggtaaattaatcttctcttgatcactaaaattcatggaataatatttttcaacaagagtacatatctatcctcggaagacaaaccacaacttaatgtcaa 51065491  T
Q  390 caaatccattgcttgctcagtaaatc--------agacaacaggggaagagaaaatgaaatgacattgataattttcatattaattgaagg 472  Q
    ||||||||||| || |||  ||||||        |||  | ||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  51065492 caaatccattgtttactctctaaatctgctatttagaagaaaggagaagaggaaatgaaatgacattgataattttcatattaattgaagg 51065582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 27133080 - 27132859
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||| ||| |||||| |||||| ||||||||||||| ||||||||||| |||  |||| |||||||||||| |||||||||||||||||||    
T  27133080 catcaataattgattcgaaactaaaacatgcgctaatttccctttcaatataaactggcatactatctgctagaaacccaagtcccatcttgtttctcaa 27132981  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    ||||| ||| ||||||||||||||  |||||||| |||||||||||    | | |||||||| ||||||||||||||| ||||||||||||||||| |||    
T  27132980 cttagacttgataattttcattgccgaaaaagatctttcagttgtg----tctgtagaaaccagaagagtcataataagacgcaacaacctatcaagcaa 27132885  T
Q  201 gaagtattgattggtttgtacattgg 226  Q
      ||||||  |||| |||| ||||||    
T  27132884 tgagtattttttgggttgtccattgg 27132859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 3288219 - 3288318
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    |||| ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  3288219 catccataattgactcggaactaatacatgcactaatttcgctttcaatataagctgacatgttatctgctagaaactcaggtcccatcttatttctcaa 3288318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 11052589 - 11052736
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    |||||||||| | |||| ||||||||||||||||||||| ||||| || ||||| |||||||||||  |  |||||| |||||| |||||||||||||||    
T  11052589 catcaataatagtctcgaaactaatacatgcactaattttcctttcaacataaattgacatgttatttgtgagaaactcaggtctcatcttgtttctcaa 11052688  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggc 148  Q
    ||||| ||| |||||| |  ||||| |||||||| |||| ||||||||    
T  11052689 cttagacttgataattcttgttgctgaaaaagatctttccgttgtggc 11052736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 47074534 - 47074609
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaa 76  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||||||||| ||||||||    
T  47074534 catcaataattgactcggaactaatacattcactaattttcctttcaatttaaactgacatgttatctgctagaaa 47074609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 4692695 - 4692598
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||| ||||||||||||||| || |||||| ||||| |||||||| ||||||| |||| |||||||| ||| ||| |||||||||||||||    
T  4692695 catcaataattgattcggaactaatacattcattaattttcctttcaatataaa-tgacatgctatctgctagaaa-ccaagtctcatcttgtttctcaa 4692598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 25537226 - 25536986
Alignment:
Q  5 aataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaactta 104  Q
    ||||||| ||||  || |||||||||||||||||| | ||| |||||||| || |||| |||  ||||||||| ||||||||||||| ||||||||||||    
T  25537226 aataattaactcaaaattaatacatgcactaattttcttttcaatataaattgtcatgctatttgctagaaactcaggtcccatcttatttctcaactta 25537127  T
Q  105 ggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaagaag 204  Q
       || |||||||||||| |  |||||||| ||| | ||||| |    | | ||||   |||||||||||||||  |||| | | |  | ||||||||||    
T  25537126 aatttgataattttcattaccgaaaaagatcttttaattgtgac----tgtggaaataggaagagtcataataaggcgcatcgatcggttaatcaagaag 25537031  T
Q  205 tattgattggtttgtacattggtagccaaacatgagcataattct 249  Q
    || |  ||||||||| |||||| |||||||||| | |||||||||    
T  25537030 taatttttggtttgtccattggcagccaaacataaacataattct 25536986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 250 - 344
Target Start/End: Original strand, 11052838 - 11052932
Alignment:
Q  250 tgattggcgaagatcgaaaagaaaatgttgaagataaaatggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaa 344  Q
    ||||||||||  ||| |||||  ||||| |||||| |||||| ||| || || | |||||||||||||||| |||| ||||||||||| ||||||    
T  11052838 tgattggcgagcatcaaaaagggaatgtcgaagatgaaatggtaaagtaatcttctcttgatcactaaaatccatgggataatattttgcaacaa 11052932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 27132678 - 27132624
Alignment:
Q  361 tcaggaaacaaagcacgacttagtgtcaacaaatccattgcttgctcagtaaatc 415  Q
    |||||| ||||||||| |||||| |||||||||||||||||| ||||| ||||||    
T  27132678 tcaggagacaaagcacaacttagagtcaacaaatccattgctcgctcactaaatc 27132624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 27132792 - 27132710
Alignment:
Q  272 aaatgttgaagataaaatggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaatagtccatat 354  Q
    |||||| |||||| |||||| |||||| || | ||||||||||| |||| |||| || ||||||||||||||| ||| |||||    
T  27132792 aaatgtagaagatgaaatggcaaattaatcttctcttgatcactgaaatccatgggaaaatatttttcaacaagagtacatat 27132710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 11052743 - 11052811
Alignment:
Q  184 aacaacctatcaatcaagaagtattgattggtttgtacattggtagccaaacatgagcataattcttga 252  Q
    ||||||||||||| ||| |||||||  |||| |||| |||||  | |||||||||||||||||||||||    
T  11052743 aacaacctatcaagcaacaagtattttttgggttgtccattgacaaccaaacatgagcataattcttga 11052811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 44316145 - 44316217
Alignment:
Q  29 tgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaac 101  Q
    |||||||||| |||||| |||||| || | |||||||||   ||||||||||  |||||||||||||||||||    
T  44316145 tgcactaattcccctttcaatatatacggtcatgttatcatttagaaacccacttcccatcttgtttctcaac 44316217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 25536902 - 25536854
Alignment:
Q  305 tcttgatcactaaaattcatgtgataatatttttcaacaatagtccatat 354  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||| |||||    
T  25536902 tcttgatcactaaaattcatgagataat-tttttcaacaaaagtacatat 25536854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 55405081 - 55404834
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||| |||||| ||||||| |||||||||||||||||    
T  55405081 catcaataattgactcggaactaatagatgcactaatttccctttcaatataaactgacatgctatctgctagatacccagggcccatcttgtttctcaa 55404982  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    ||| | ||| ||||||||||||||| |||||||| |||||||||||||    | |||||||  |||||||||||||||  ||||||||| ||||||||||    
T  55404981 cttggacttgataattttcattgctgaaaaagatctttcagttgtggc----tgtagaaactggaagagtcataataaggcgcaacaacttatcaatcaa 55404886  T
Q  201 gaagtattgattggtttgtacattggtagccaaacatgagcataattcttga 252  Q
    ||||||||  ||| ||||| || ||| ||||||||||||||| |||||||||    
T  55404885 gaagtattctttgttttgtccagtggcagccaaacatgagcacaattcttga 55404834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 16401111 - 16400990
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||  || ||||||||||| ||||||||||||||||||||||    
T  16401111 catcaataattgactcggaactaatacatgcactaatttccctttcaatataaagcgacatactacccgctagaaactcaggtcccatcttgtttctcaa 16401012  T
Q  101 cttaggcttaataattttcatt 122  Q
    |||||  || ||||||||||||    
T  16401011 cttagatttgataattttcatt 16400990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 27599288 - 27599193
Alignment:
Q  5 aataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||  ||||||||||| ||| |||||||||||||||    
T  27599288 aataattgactcggaactaatacatgcactaatatccctttcaatataaactgacatgctatcttctagaaacccaagtctcatcttgtttctcaa 27599193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 14461689 - 14461541
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||| |||||| |||||||||| |||| ||||||||| ||  |||||||||| |||| ||||   ||||||||||  ||||||||||||||||||    
T  14461689 catcaataactgactcagaactaatacttgcattaatttcccgtttgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctcaa 14461590  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggct 149  Q
    | ||| ||| ||||| ||||||||| |||||||| | ||||||||||||    
T  14461589 cctagtcttgataatcttcattgctgaaaaagatctctcagttgtggct 14461541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 14797383 - 14797603
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||| |   ||||||||||  ||||||| |||||||  || |||||||||||| |||  |||| ||| ||| || ||||||||||||||||    
T  14797383 catcaataattgattaaaaactaatacagtcactaatatccctttcgatgtaaactgacatgctatttgctaaaaatccatgttccatcttgtttctcaa 14797482  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    |||||  || |||||||||||||||  ||||||| |||||||||||||    | |||||||| |||||||||||| || ||||||||||| ||||| |||    
T  14797483 cttagatttgataattttcattgct-gaaaagatctttcagttgtggc----tgtagaaaccggaagagtcataacaagacgcaacaaccaatcaagcaa 14797577  T
Q  201 gaagtattgattggtttgtacattgg 226  Q
     |||| ||  |||| |||| ||||||    
T  14797578 caagtgttttttgggttgtccattgg 14797603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 53816255 - 53816354
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||   |||||| ||||||| |||  |||||||||||||||| |||||||||||||||    
T  53816255 catcaataattgactcggaactaatacatgcactaattttcctttcggtataaattgacatgctatatgctagaaacccaggtctcatcttgtttctcaa 53816354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 43335452 - 43335541
Alignment:
Q  8 aattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttct 97  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||  |||||||| |||||||||||||| |||||    
T  43335452 aattgactcggaactaatacatgcactaatttccctttcaatataaactaacatgctatatgctagaaatccaggtcccatcttatttct 43335541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 37466038 - 37466186
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    |||||| |||||| || |||||||||||| ||||||| |||||||  || |||||| ||||| |||  |||| |||| || |||||||||||||||||||    
T  37466038 catcaaaaattgattcagaactaatacattcactaatatccctttcgatgtaaactcacatgctatttgctaaaaactcatgtcccatcttgtttctcaa 37466137  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggct 149  Q
    |||||  || ||||||||||||||| ||||| |  ||||||||||||||    
T  37466138 cttagatttgataattttcattgctgaaaaaaacctttcagttgtggct 37466186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 44504805 - 44504730
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaa 76  Q
    ||||||||||||| |||||||||||||||||  |||||| ||||| ||||||||||||| ||||||  ||||||||    
T  44504805 catcaataattgattcggaactaatacatgctttaattttcctttcaatataaactgacttgttatatgctagaaa 44504730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 24536072 - 24536123
Alignment:
Q  26 acatgcactaatttccctttaaatataaactgacatgttatccgctagaaac 77  Q
    ||||||| |||||||||||| |||||||||||||||||| ||||||||||||    
T  24536072 acatgcattaatttccctttcaatataaactgacatgttctccgctagaaac 24536123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 354
Target Start/End: Original strand, 14797684 - 14797772
Alignment:
Q  266 aaaagaaaatgttgaagataaaatggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaatagtccatat 354  Q
    ||||| ||||||||||||| |||||| |||||| |  | || || |||||||||| |||| |||||||||||||||||| ||| |||||    
T  14797684 aaaaggaaatgttgaagatgaaatggcaaattaatgttttcctggtcactaaaatccatgggataatatttttcaacaagagtacatat 14797772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 250 - 354
Target Start/End: Complemental strand, 55404807 - 55404703
Alignment:
Q  250 tgattggcgaagatcgaaaagaaaatgttgaagataaaatggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaatagtc 349  Q
    ||||||||||| ||| ||||| |||| | |||||| |||||| || ||| || | || ||||||||||||| |||| |||||||||||| ||||| |||     
T  55404807 tgattggcgaacatcaaaaaggaaatctcgaagatcaaatggcaatttaatcttctcatgatcactaaaatccatgggataatatttttgaacaagagta 55404708  T
Q  350 catat 354  Q
    |||||    
T  55404707 catat 55404703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 2664957 - 2665023
Alignment:
Q  83 tcccatcttgtttctcaacttaggcttaataattttcattgctaaaaaagatatttcagttgtggct 149  Q
    ||||||||||||||||||| ||  ||| ||||| ||||||| | |||||||| | ||||||||||||    
T  2664957 tcccatcttgtttctcaacctattcttgataatcttcattgttgaaaaagatctctcagttgtggct 2665023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 1e-67; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 8425356 - 8425603
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||| |||||| ||||||| | |||||||||||||||    
T  8425356 catcaataattgactcggaactaatagatgcactaatttccctttcaatataaactgacatgctatctgctagatacccagggctcatcttgtttctcaa 8425455  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    ||| | ||| ||||||||||||||| |||||||| |||| ||||||||    | |||||||  |||||||||||||||  ||||||||| ||||||||||    
T  8425456 cttggacttgataattttcattgctgaaaaagatctttctgttgtggc----tgtagaaactggaagagtcataataaggcgcaacaacttatcaatcaa 8425551  T
Q  201 gaagtattgattggtttgtacattggtagccaaacatgagcataattcttga 252  Q
    ||||||||  ||| ||||| || ||| ||||||||||||||| |||||||||    
T  8425552 gaagtattctttgttttgtccagtggcagccaaacatgagcacaattcttga 8425603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 2736649 - 2736428
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||| || |||||||||||  ||||||| |||||||  || |||||||||||| |||  |||| ||||||| || ||||||||||||||||    
T  2736649 catcaataattgattcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaa 2736550  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    |||||  || ||||||||||||||| |||||||| |||||||||||||    | |||||||| |||||||||||| || ||||||||||||||||| |||    
T  2736549 cttagatttgataattttcattgctgaaaaagatctttcagttgtggc----tgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaa 2736454  T
Q  201 gaagtattgattggtttgtacattgg 226  Q
     |||| ||  |||| |||| ||||||    
T  2736453 caagtgttttttgggttgtccattgg 2736428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 22126548 - 22126769
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||| || |||||||||||| ||||||| ||| |||  || |||||||||||| |||  |||| ||||||| |||||||||  ||||||||    
T  22126548 catcaataattgattcagaactaatacattcactaatatccttttcgatgtaaactgacatgctatttgctaaaaacccatgtcccatctcttttctcaa 22126647  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    |||||  || ||||||||||||||| |||||||| |||||||||||||    | |||||||| |||||||||||| || ||||||||||||||||| |||    
T  22126648 cttagatttgataattttcattgctgaaaaagatctttcagttgtggc----tgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaa 22126743  T
Q  201 gaagtattgattggtttgtacattgg 226  Q
     |||| ||  |||| |||| ||||||    
T  22126744 caagtgttttttgggttgtccattgg 22126769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 40925695 - 40925495
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||| ||  ||||||||||  ||||||| |||||||  || |||||||||||| |||  |||| ||||||| || ||||||||||||||||    
T  40925695 catcaataattgattcataactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaa 40925596  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    |||||  || ||||||||||||||| |||||||| |||||||||||||    | |||||||| |||||||||||| || ||||||||||||||||| |||    
T  40925595 cttagatttgataattttcattgctgaaaaagatctttcagttgtggc----tgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaa 40925500  T
Q  201 gaagt 205  Q
     ||||    
T  40925499 caagt 40925495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 54788915 - 54788816
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||   ||||||| ||||||||||||||||||||||    
T  54788915 catcaataattgactcggaactaatacatgcactaatttcactttcaatataatctgacatgttatctcttagaaactcaggtcccatcttgtttctcaa 54788816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 22509675 - 22509823
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||| |||||| |||||||||| ||||||||| |||||||  |||||||||| |||| ||||   ||||||||||  ||||||||||||||||||    
T  22509675 catcaataactgactcagaactaatacttgcactaatatccctttcgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctcaa 22509774  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggct 149  Q
    | ||| ||| ||||| ||||||||| |||||||| | ||||||||||||    
T  22509775 cctagtcttgataatcttcattgctgaaaaagatctctcagttgtggct 22509823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 14195355 - 14195454
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||  || | ||| ||||||||||||||  |||||||    
T  14195355 catcaataattgactcggaactaatacatgcactaatttttctttaaatataaactaacatgttatttgcgaaaaatccaggtcccatcttaattctcaa 14195454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 39622067 - 39621919
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||| | | || |||||||||| |||||||||||||||||  |||| ||| | |||| ||||   ||||||||||  ||||||||||||||||||    
T  39622067 catcaataactaattcagaactaatacttgcactaatttccctttcgatattaaccgtcatgctatcatttagaaacccacttcccatcttgtttctcaa 39621968  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggct 149  Q
    | ||| ||| ||||| ||||||||  |||||||| | ||||||||||||    
T  39621967 cctagtcttgataatcttcattgccgaaaaagatctctcagttgtggct 39621919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19972061 - 19972121
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacat 61  Q
    |||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||    
T  19972061 catcaataattgactcggaattaatagatgcactaatttccctttcaatataaactgacat 19972121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 21496746 - 21496647
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||||||| ||  || |||| ||||||||||||||| |||| |||||  ||||||||| ||||||||| || ||| |||||| ||||||||    
T  21496746 catcaataattgactcgaaagaaacacatacactaatttccctttcaatacaaactatcatgttatctgctagaaactcatgtctcatcttatttctcaa 21496647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 2736347 - 2736259
Alignment:
Q  266 aaaagaaaatgttgaagataaaatggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaatagtccatat 354  Q
    ||||| ||||||| ||||| |||||| |||||| || | || || |||||||||| |||| |||||||||||||||||| ||| |||||    
T  2736347 aaaaggaaatgtttaagatgaaatggcaaattaatcttctcctggtcactaaaatccatgggataatatttttcaacaagagtacatat 2736259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 354
Target Start/End: Original strand, 22126850 - 22126938
Alignment:
Q  266 aaaagaaaatgttgaagataaaatggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaatagtccatat 354  Q
    ||||| |||||||  |||| |||||| |||||| || | || ||||||||||||| |||| |||||||||||||||||| ||| |||||    
T  22126850 aaaaggaaatgttttagatgaaatggcaaattaatcttctcctgatcactaaaatccatgggataatatttttcaacaagagtacatat 22126938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 40925393 - 40925305
Alignment:
Q  266 aaaagaaaatgttgaagataaaatggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaatagtccatat 354  Q
    ||||| ||||||| ||||| |||||| |||||| || | || || |||||||||| |||| |||||||||||||||||| ||| |||||    
T  40925393 aaaaggaaatgtttaagatgaaatggcaaattaatcttctcctggtcactaaaatccatgggataatatttttcaacaagagtacatat 40925305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 250 - 344
Target Start/End: Original strand, 8425630 - 8425724
Alignment:
Q  250 tgattggcgaagatcgaaaagaaaatgttgaagataaaatggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaa 344  Q
    ||||||||||| ||| ||||| |||||| |||||| |||||| || ||| || |  | ||||||||||||| |||| |||||||||||| |||||    
T  8425630 tgattggcgaacatcaaaaaggaaatgtcgaagatcaaatggcaatttaatcttcgcatgatcactaaaatccatgggataatatttttgaacaa 8425724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 368 - 414
Target Start/End: Complemental strand, 40925266 - 40925220
Alignment:
Q  368 acaaagcacgacttagtgtcaacaaatccattgcttgctcagtaaat 414  Q
    ||||||||| |||||| |||||||||||||||||||||||| |||||    
T  40925266 acaaagcacaacttagagtcaacaaatccattgcttgctcactaaat 40925220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 415
Target Start/End: Complemental strand, 2736220 - 2736173
Alignment:
Q  368 acaaagcacgacttagtgtcaacaaatccattgcttgctcagtaaatc 415  Q
    ||||||||| |||||  |||||||||||||||||||||||| ||||||    
T  2736220 acaaagcacaacttaaagtcaacaaatccattgcttgctcactaaatc 2736173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 8e-63; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 37126683 - 37126437
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||| |||| |||| |||||| ||||||| |||||||||||||||||    
T  37126683 catcaataattaactcggaactaatagatgcactaatttccctttcaatataaactggcatgctatctgctagatacccagggcccatcttgtttctcaa 37126584  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    ||| | ||| ||||||||||||||| |||||||| |||||||||||||    | |||||||  |||||||||||||||  ||||||||| ||||||||||    
T  37126583 cttggacttgataattttcattgctgaaaaagatctttcagttgtggc----tgtagaaactggaagagtcataataaggcgcaacaacttatcaatcaa 37126488  T
Q  201 gaagtattgattggtttgtacattggtagccaaacatgagcataattcttga 252  Q
    ||||||||  ||| ||||| |  ||| ||||||||||||||| |||||||||    
T  37126487 gaagtattctttgttttgt-ccgtggcagccaaacatgagcacaattcttga 37126437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8363787 - 8363567
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||| || |||||||||||||| ||||||||||||| |||||||||||||||  |||| |||||| || |||||| ||| ||||||| |||    
T  8363787 catcaataattgattcagaactaatacatgcgctaatttccctttcaatataaactgacatactatctgctagatactcaggtctcatattgtttcacaa 8363688  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    ||||| ||| ||||||||||||||  |||||||| |||||||||||||    | ||||| || |||| |||||||||| ||||||||||| ||||| |||    
T  8363687 cttagacttgataattttcattgccgaaaaagatctttcagttgtggc----tgtagaatccggaagtgtcataataagacgcaacaaccaatcaagcaa 8363592  T
Q  201 gaagtattgattggtttgtacattg 225  Q
     |||||||  |||| |||| |||||    
T  8363591 caagtattttttgggttgtccattg 8363567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 31422018 - 31421797
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||| ||  ||||||||||  ||||||| |||||||  || |||||||||||| |||  |||| |||| || || ||||||||||||||||    
T  31422018 catcaataattgattcataactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacacatgtaccatcttgtttctcaa 31421919  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    |||||  || ||||||||||||||| |||||||| |||||||||||||    | |||||||| |||||||||||| || ||||||||||||||||| |||    
T  31421918 cttagatttgataattttcattgctgaaaaagatctttcagttgtggc----tgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaa 31421823  T
Q  201 gaagtattgattggtttgtacattgg 226  Q
     |||| ||  |||| |||| ||||||    
T  31421822 caagtgttttttgggttgtccattgg 31421797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 41596768 - 41596620
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||| |||||| |||||||||| |||||||||||||||||  |||||||||| |||| ||||   ||||||||||  ||||||||||||||||||    
T  41596768 catcaataactgactcagaactaatacttgcactaatttccctttcgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctcaa 41596669  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggct 149  Q
    | ||| ||| ||||| ||||||||| |||||||| | ||||||||||||    
T  41596668 cctagtcttgataatcttcattgctgaaaaagatctctcagttgtggct 41596620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 18295127 - 18294989
Alignment:
Q  7 taattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaacttagg 106  Q
    ||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||   |||||| | |||||| || || ||||| |||||||     
T  18295127 taattaactcggaactagtacatgcactaatttccctttcaatataaattgacatgttatctattagaaatctaggtcctatattctttcttaacttaga 18295028  T
Q  107 cttaataattttcattgctaaaaaagatatttcagttgt 145  Q
    ||| ||||||||||||||| ||||| |||||||||||||    
T  18295027 cttgataattttcattgctgaaaaaaatatttcagttgt 18294989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 19341032 - 19340943
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatct 90  Q
    |||||||| ||||||| |||||||||||||||||||||||  ||| |||||||||| | ||| |||| ||||||||| |||||| |||||    
T  19341032 catcaatagttgactcagaactaatacatgcactaatttcattttcaatataaactaaaatgatatctgctagaaactcaggtctcatct 19340943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 31421716 - 31421628
Alignment:
Q  266 aaaagaaaatgttgaagataaaatggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaatagtccatat 354  Q
    ||||| ||||| ||||||| |||||| |||||| || | || |||||||||||||||||| |||||||||||||||||| ||| |||||    
T  31421716 aaaaggaaatggtgaagatgaaatggcaaattaatcttctcctgatcactaaaattcatgggataatatttttcaacaagagtacatat 31421628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10509285 - 10509329
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttcccttt 45  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  10509285 catcaataatagactcggaactaatacatgcactaatttcccttt 10509329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 8363365 - 8363311
Alignment:
Q  361 tcaggaaacaaagcacgacttagtgtcaacaaatccattgcttgctcagtaaatc 415  Q
    |||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  8363365 tcaggagacaaagcacaacttagagtcaacaaatccattgcttgctcactaaatc 8363311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 33532127 - 33532041
Alignment:
Q  13 actcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctca 99  Q
    |||| |||||||||| |||||||||||||||||  |||||||| | |||| ||||   ||||||||||  |||||||||||||||||    
T  33532127 actcagaactaatacttgcactaatttccctttcgatataaaccgtcatgctatcatttagaaacccacttcccatcttgtttctca 33532041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 8363485 - 8363397
Alignment:
Q  266 aaaagaaaatgttgaagataaaatggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaatagtccatat 354  Q
    ||||| |||||| |||||| |||||| |||||| |  | |||| ||||||||||| |||| |||||||||||||||||| ||| |||||    
T  8363485 aaaaggaaatgtcgaagatgaaatggcaaattaattttctctttatcactaaaatccatgggataatatttttcaacaagagtacatat 8363397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 10511223 - 10511183
Alignment:
Q  5 aataattgactcggaactaatacatgcactaatttcccttt 45  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  10511223 aataatagactcggaactaatacatgcactaatttcccttt 10511183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 415
Target Start/End: Complemental strand, 31421589 - 31421542
Alignment:
Q  368 acaaagcacgacttagtgtcaacaaatccattgcttgctcagtaaatc 415  Q
    ||||||||| |||||  |||||||||||||||||||||||| ||||||    
T  31421589 acaaagcacaacttaaagtcaacaaatccattgcttgctcactaaatc 31421542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25156580 - 25156622
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccct 43  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||    
T  25156580 catcaataattgactcagaactaacacatgcattaatttccct 25156622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 3e-53; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 5088733 - 5088487
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||||| | |||||||| ||||||||||||| |||| |||||||||||||||| |||| |||||| | ||||| ||||| |||||||||||    
T  5088733 catcaataattgacttgaaactaatagatgcactaatttctctttcaatataaactgacatgctatctgctagatatccagggcccattttgtttctcaa 5088634  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    ||| | ||| ||||||||||||||| |||||||| |||||||||||||    | |||||||   ||||||||||||||  ||||||||| ||||||||||    
T  5088633 cttggacttgataattttcattgctgaaaaagatctttcagttgtggc----tgtagaaactgaaagagtcataataaggcgcaacaacttatcaatcaa 5088538  T
Q  201 gaagtattgattggtttgtacattggtagccaaacatgagcataattcttga 252  Q
    ||||||||  ||| ||||| || ||| ||||||||||||||| ||| |||||    
T  5088537 gaagtattctttgttttgtcca-tggcagccaaacatgagcacaatgcttga 5088487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 9844860 - 9845050
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||| |||| |||||||||| | ||||| |||||||||||||    
T  9844860 catcaataattgactcgaaactaatacatgcagtaattttcctttcaatataaactgacatgctatcggctagaaacctaagtcccgtcttgtttctcaa 9844959  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatca 195  Q
    ||||| ||| ||||||||||||||| |||||||| |||||||||||||      |||||||  ||||| ||||||||||||||||||||||||||    
T  9844960 cttagacttgataattttcattgctgaaaaagatctttcagttgtggc----ggtagaaactggaagaatcataataaaacgcaacaacctatca 9845050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 43525374 - 43525226
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||| |||||| |||||||||| ||||||| |||||||||  |||||||||| |||| ||||   ||||||||||  ||||||||||||||||||    
T  43525374 catcaataactgactcagaactaatacttgcactagtttccctttcgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctcaa 43525275  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggct 149  Q
    | ||| ||| ||||| ||||||||| |||||||| | ||||||||||||    
T  43525274 cctagtcttgataatcttcattgctgaaaaagatctctcagttgtggct 43525226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 155 - 252
Target Start/End: Complemental strand, 41318013 - 41317916
Alignment:
Q  155 tagaaacctgaagagtcataataaaacgcaacaacctatcaatcaagaagtattgattggtttgtacattggtagccaaacatgagcataattcttga 252  Q
    ||||||| | ||||||| |||||| |||||||||||||||||||||||||||||  |||||||||  ||||||||| |||||||||||||||||||||    
T  41318013 tagaaacttaaagagtcgtaataagacgcaacaacctatcaatcaagaagtattttttggtttgtctattggtagctaaacatgagcataattcttga 41317916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 12055134 - 12055263
Alignment:
Q  19 aactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaacttaggcttaataatttt 118  Q
    ||||||||| ||||||||||||||||| ||||||||| | |||| ||||   ||||||||||  |||||| |||||||||||| ||| ||| ||||| ||    
T  12055134 aactaatacttgcactaatttccctttcaatataaaccgtcatgctatcatttagaaacccacttcccattttgtttctcaacctagtcttgataatctt 12055233  T
Q  119 cattgctaaaaaagatatttcagttgtggc 148  Q
    ||||||| |||||||| | |||||||||||    
T  12055234 cattgctgaaaaagatctctcagttgtggc 12055263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 5885471 - 5885560
Alignment:
Q  8 aattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttct 97  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| |||  ||||||||  |||||| |||||| |||||    
T  5885471 aattgactcggaactaatacatgcactaattcccctttcaatataaactaacatgctatatgctagaaattcaggtctcatcttatttct 5885560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 41318168 - 41318093
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaa 76  Q
    |||||||||||||||||||| |||||  ||||||||||||||||| ||||||| |||||||| |||  ||||||||    
T  41318168 catcaataattgactcggaagtaatatgtgcactaatttccctttcaatataacctgacatgatatttgctagaaa 41318093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17738125 - 17738191
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaattt-----ccctttaaatataaactgacatg 62  Q
    |||||| ||||||||||||||||||||||||||||||||     | |||| ||||||||||||||||    
T  17738125 catcaacaattgactcggaactaatacatgcactaatttaatttctcttttaatataaactgacatg 17738191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 5088444 - 5088356
Alignment:
Q  266 aaaagaaaatgttgaagataaaatggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaatagtccatat 354  Q
    ||||| |||||| |||||| |||||| || ||| || | || ||||||||||||| |||| |||||||||||| ||||| ||| |||||    
T  5088444 aaaaggaaatgtcgaagatcaaatggcaatttaatcttctcatgatcactaaaatccatgggataatatttttgaacaagagtacatat 5088356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 415
Target Start/End: Complemental strand, 5088317 - 5088270
Alignment:
Q  368 acaaagcacgacttagtgtcaacaaatccattgcttgctcagtaaatc 415  Q
    |||||| || |||||| |||||||||||||||||||||||| ||||||    
T  5088317 acaaagaacaacttagagtcaacaaatccattgcttgctcactaaatc 5088270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 3e-47; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 22270388 - 22270609
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||| || |||||||||||  ||||||| ||||||| ||| |||||||||||| |||  |||| ||||||| || ||||||||||||||||    
T  22270388 catcaataattgattcagaactaatacactcactaatatccctttcaatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaa 22270487  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    |||||  |||||||||||||||||| |||||||| |||||||||||||    | |||||||| |||||||||||| || ||||||||||||||||| |||    
T  22270488 cttagatttaataattttcattgctgaaaaagatctttcagttgtggc----tgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaa 22270583  T
Q  201 gaagtattgattggtttgtacattgg 226  Q
     |||| ||  |||| |||| ||||||    
T  22270584 caagtgttttttgggttgtccattgg 22270609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 35635112 - 35635306
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgct---agaaacccaggtcccatcttgtttct 97  Q
    |||| ||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||| |||   || |||||| ||| |||||||||| |    
T  35635112 catcgataattgactcagaactaatacatgcactaatttcccttttaatataaactaacatgttatctgctatcagtaacccaagtctcatcttgttttt 35635211  T
Q  98 caacttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaa 196  Q
    |||||||| ||| |||||| |||||||| |||||||| ||||| || || |      |||||||  |||| |||||||||| |||||||||||||||||    
T  35635212 caacttagacttgataattctcattgctgaaaaagatctttcaattatgac----ggtagaaactagaagggtcataataagacgcaacaacctatcaa 35635306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 37259209 - 37259067
Alignment:
Q  2 atcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaac 101  Q
    |||||||||||| ||| ||||||||||||||| ||||||| ||| |||||||||||||||| ||||  |||||||||||||||||||||| ||| |||||    
T  37259209 atcaataattgagtcgaaactaatacatgcacaaatttccttttcaatataaactgacatgctatca-ctagaaacccaggtcccatcttatttatcaac 37259111  T
Q  102 ttaggcttaataattttcattgctaaaaaagatatttcagttgt 145  Q
    || | |||||||||||| |||||| |||||||| |||| |||||    
T  37259110 tttgacttaataattttgattgctgaaaaagatctttcggttgt 37259067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 38395173 - 38395315
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgct---agaaacccaggtcccatcttgtttct 97  Q
    |||| ||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||| |||   || |||| | ||| ||||||||||||    
T  38395173 catcgataattgactcagaactaatacatgcactaatttcccttttaatataaactaacatgttatctgctatcagtaaccgaagtctcatcttgtttct 38395272  T
Q  98 caacttaggcttaataattttcattgctaaaaaagatatttca 140  Q
    |||||| | ||| ||||||||||||||| |||||||| |||||    
T  38395273 caactttgacttgataattttcattgctgaaaaagatctttca 38395315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 14009618 - 14009470
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||| ||||||  ||||||||| |||||||||||||||||  |||||||||| |||| ||||   ||||||||||  ||||||||||||||||||    
T  14009618 catcaataactgactcataactaatacttgcactaatttcccttttgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctcaa 14009519  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggct 149  Q
    | ||| ||| ||||| ||||||||| |||||||| | ||||||||||||    
T  14009518 cctagtcttgataatcttcattgctgaaaaagatctctcagttgtggct 14009470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 23121072 - 23121216
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||| |||||| |||||||||| |||||||||||||||||  |||||||||| |||| ||||   ||||||||||  ||||||||||||||||||    
T  23121072 catcaataactgactcagaactaatacttgcactaatttccctttcgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctcaa 23121171  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgt 145  Q
    | ||| ||| ||||| ||| ||||| |||||||| | ||||||||    
T  23121172 cctagtcttgataatcttcgttgctgaaaaagatctctcagttgt 23121216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 19676984 - 19677060
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaac 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||| ||||||||    
T  19676984 catcaataattgactcggaactaatacatgcactaatttccctttcaatataaactgatatgctatccactagaaac 19677060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 28313431 - 28313286
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||| | |||| |||||||||| |||||||||||| |||| ||||||||| | |||| ||||   ||||||||||  ||||||||||||||||||    
T  28313431 catcaataactaactcagaactaatacttgcactaatttcactttcaatataaaccgtcatgctatcatttagaaacccacttcccatcttgtttctcaa 28313332  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtg 146  Q
    | ||| ||| ||||| ||||||||  |||||||| | |||||||||    
T  28313331 cctagtcttgataatcttcattgccgaaaaagatctctcagttgtg 28313286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 19663169 - 19663245
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaac 77  Q
    ||||||||||||||| | |||||||||||||||||||||| |||| ||||||||| |||||| ||||| ||| ||||    
T  19663169 catcaataattgacttgaaactaatacatgcactaatttcactttcaatataaaccgacatgctatccactataaac 19663245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 354
Target Start/End: Original strand, 22270690 - 22270778
Alignment:
Q  266 aaaagaaaatgttgaagataaaatggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaatagtccatat 354  Q
    ||||| ||||||| ||||| |||||| |||||| || | || || |||||||||| |||| |||||||||||||||||| ||| |||||    
T  22270690 aaaaggaaatgtttaagatgaaatggcaaattaatcttctcctggtcactaaaatccatgggataatatttttcaacaagagtacatat 22270778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19647059 - 19647027
Alignment:
Q  1 catcaataattgactcggaactaatacatgcac 33  Q
    |||||||||||||||||||||||||||||||||    
T  19647059 catcaataattgactcggaactaatacatgcac 19647027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 415
Target Start/End: Original strand, 22270817 - 22270864
Alignment:
Q  368 acaaagcacgacttagtgtcaacaaatccattgcttgctcagtaaatc 415  Q
    ||||||||| |||||  |||||||||||||||||||||||| ||||||    
T  22270817 acaaagcacaacttaaagtcaacaaatccattgcttgctcactaaatc 22270864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 32382250 - 32382012
Alignment:
Q  6 ataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaacttag 105  Q
    ||||||||||| |||||||| |||||| |||||||||||| ||||||||||||||| ||||| ||||| || ||| ||||||||||||||||||||||||    
T  32382250 ataattgactccgaactaatgcatgcagtaatttcccttttaatataaactgacatcttatctgctagtaaaccatgtcccatcttgtttctcaacttag 32382151  T
Q  106 gcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaagaagt 205  Q
      |||||||| ||||||| | |||||||| ||||| |||    ||    |||||||  |||||||| |||||| ||||||||||||||||| |||||| |    
T  32382150 agttaataatcttcattgttgaaaaagatctttcaattg----tagtggtagaaactggaagagtcgtaataagacgcaacaacctatcaagcaagaaat 32382055  T
Q  206 attgattggtttgtacattggtagccaaacatgagcataattcttga 252  Q
    |||  |||| |||| ||||||    ||||||||||||||||| ||||    
T  32382054 attttttgggttgtccattgg----caaacatgagcataattattga 32382012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 32436205 - 32435967
Alignment:
Q  6 ataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaacttag 105  Q
    ||||||||||| |||||||| |||||| |||||||||||| ||||||||||||||| ||||| ||||| || ||| ||||||||||||||||||||||||    
T  32436205 ataattgactccgaactaatgcatgcagtaatttcccttttaatataaactgacatcttatctgctagtaaaccatgtcccatcttgtttctcaacttag 32436106  T
Q  106 gcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaagaagt 205  Q
      |||||||| ||||||| | |||||||| ||||| |||    ||    |||||||  |||||||| |||||| ||||||||||||||||| |||||| |    
T  32436105 agttaataatcttcattgttgaaaaagatctttcaattg----tagtggtagaaactggaagagtcgtaataagacgcaacaacctatcaagcaagaaat 32436010  T
Q  206 attgattggtttgtacattggtagccaaacatgagcataattcttga 252  Q
    |||  |||| |||| ||||||    ||||||||||||||||| ||||    
T  32436009 attttttgggttgtccattgg----caaacatgagcataattattga 32435967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 33363740 - 33363520
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||| || |||||||||||| ||||||| ||| |||  || |||||||||||| |||  |||| ||||| | |||||||||||||||||||    
T  33363740 catcaataattgattcagaactaatacattcactaatatccttttcgatgtaaactgacatgctatttgctaaaaacc-atgtcccatcttgtttctcaa 33363642  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    |||||  || |||||||||||||||||||||||| |||||||||||||    | |||||||| |||||||||||| || ||||||||||||||||| |||    
T  33363641 cttagatttgataattttcattgctaaaaaagatctttcagttgtggc----tgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaa 33363546  T
Q  201 gaagtattgattggtttgtacattgg 226  Q
     |||| ||  |||| |||| ||||||    
T  33363545 caagtgttttttgggttgtccattgg 33363520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 42809678 - 42809457
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||  || |||||||||||| ||||||| |||||||  || |||||||||||| |||  |||| ||||||| |||||||||||||||||||    
T  42809678 catcaataattgtttcagaactaatacattcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgtcccatcttgtttctcaa 42809579  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    |||||  || ||||||||||||||| |||||||| |||||||||||||    | |||||||| |||||||||||| || | ||||||| ||||||| |||    
T  42809578 cttagatttgataattttcattgctgaaaaagatctttcagttgtggc----tgtagaaaccggaagagtcataacaagatgcaacaatctatcaagcaa 42809483  T
Q  201 gaagtattgattggtttgtacattgg 226  Q
     |||| ||  |||| |||| ||||||    
T  42809482 caagtgttttttgggttgtccattgg 42809457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 18427694 - 18427455
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    |||||||||||||||| |||||||| ||| || |||||| ||||| ||||||||||||||||||||  |||||||||||| |||  |||||||           
T  18427694 catcaataattgactcagaactaatgcatacattaatttacctttcaatataaactgacatgttattagctagaaacccatgtcatatcttgt------- 18427602  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
     |||| ||| ||||||||||||| | ||||| || |||||||||||||    | |||||||  || ||||||||||||  ||||||||| ||| || |||    
T  18427601 -ttagacttgataattttcattgttgaaaaaaatctttcagttgtggc----tgtagaaactggatgagtcataataaggcgcaacaacttattaaccaa 18427507  T
Q  201 gaagtattgattggtttgtacattggtagccaaacatgagcataattcttga 252  Q
    ||||||||  |||||||||  | ||||||| ||||||||||| |||||||||    
T  18427506 gaagtattttttggtttgtctagtggtagctaaacatgagcacaattcttga 18427455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 12868401 - 12868549
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||| |||||| |||||||||| |||||||||||||||||  |||||||||| |||| ||||   ||||||||||  ||||||||||||||||||    
T  12868401 catcaataactgactcagaactaatacttgcactaatttccctttcgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctcaa 12868500  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggct 149  Q
    | ||| ||| ||||| ||||||||| |||||||| | ||||||||||||    
T  12868501 cctagtcttgataatattcattgctgaaaaagatctctcagttgtggct 12868549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 20099020 - 20098937
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtc 84  Q
    ||||||||||||||||||||||||||  ||||||||||||| ||| |||||||||| |||||||||| | ||||||||||||||    
T  20099020 catcaataattgactcggaactaatatttgcactaatttccttttcaatataaacttacatgttatctgttagaaacccaggtc 20098937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33236611 - 33236655
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttcccttt 45  Q
    |||||||||| |||||||||||||||||| |||||||||||||||    
T  33236611 catcaataatagactcggaactaatacatacactaatttcccttt 33236655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 368 - 415
Target Start/End: Complemental strand, 33363312 - 33363265
Alignment:
Q  368 acaaagcacgacttagtgtcaacaaatccattgcttgctcagtaaatc 415  Q
    ||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  33363312 acaaagcacaacttagagtcaacaaatccattgcttgctcactaaatc 33363265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 266 - 344
Target Start/End: Complemental strand, 33363439 - 33363361
Alignment:
Q  266 aaaagaaaatgttgaagataaaatggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaa 344  Q
    ||||| |||||||  |||| |||||| |||||| || | || ||||||||||||| |||| ||||||||||||||||||    
T  33363439 aaaaggaaatgttttagatgaaatggcaaattaatcttctcctgatcactaaaatccatgggataatatttttcaacaa 33363361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 357 - 415
Target Start/End: Complemental strand, 42809260 - 42809202
Alignment:
Q  357 atcatcaggaaacaaagcacgacttagtgtcaacaaatccattgcttgctcagtaaatc 415  Q
    |||||| ||| ||||||||| |||||| |||||||||||||||| ||||||| ||||||    
T  42809260 atcatccggagacaaagcacaacttagagtcaacaaatccattggttgctcactaaatc 42809202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 344
Target Start/End: Complemental strand, 18427385 - 18427346
Alignment:
Q  305 tcttgatcactaaaattcatgtgataatatttttcaacaa 344  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  18427385 tcttgatcactaaaatccatgggataatatttttcaacaa 18427346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 308 - 354
Target Start/End: Complemental strand, 42809334 - 42809288
Alignment:
Q  308 tgatcactaaaattcatgtgataatatttttcaacaatagtccatat 354  Q
    ||||||||||||| |||| |||||||||||||||||| ||| |||||    
T  42809334 tgatcactaaaatccatgggataatatttttcaacaagagtacatat 42809288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 11932 - 12074
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgct---agaaacccaggtcccatcttgtttct 97  Q
    |||| ||||||||||  ||||| |||||||||||||||||||||| |||||||||| |||||||||| |||   || |||||| ||| ||| ||||||||    
T  11932 catcgataattgacttagaacttatacatgcactaatttcccttttaatataaactaacatgttatctgctatgagtaacccaagtctcatattgtttct 12031  T
Q  98 caacttaggcttaataattttcattgctaaaaaagatatttca 140  Q
    |||||||| ||| ||||||||||||||| |||||||| |||||    
T  12032 caacttagacttgataattttcattgctgaaaaagatctttca 12074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 42348 - 42128
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||||||| |   ||||||||||  ||||||| |||||||  || |||||||||||| |||  |||| ||| ||| || ||||||||||||||||    
T  42348 catcaataattgattaaaaactaatacagtcactaatatccctttcgatgtaaactgacatgctatttgctaaaaatccatgttccatcttgtttctcaa 42249  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtggctatatatagaaacctgaagagtcataataaaacgcaacaacctatcaatcaa 200  Q
    |||||  || |||||||||||||||  ||||||| |||||||||||||    | |||||||| |||||||||||| || ||||||||||| ||||| |||    
T  42248 cttagatttgataattttcattgct-gaaaagatctttcagttgtggc----tgtagaaaccggaagagtcataacaagacgcaacaaccaatcaagcaa 42154  T
Q  201 gaagtattgattggtttgtacattgg 226  Q
     |||| ||  |||| |||| ||||||    
T  42153 caagtgttttttgggttgtccattgg 42128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 42047 - 41959
Alignment:
Q  266 aaaagaaaatgttgaagataaaatggaaaattagtcgtatcttgatcactaaaattcatgtgataatatttttcaacaatagtccatat 354  Q
    ||||| ||||||||||||| |||||| |||||| |  |||| || |||||||||| |||| |||||||||||||||||| ||| |||||    
T  42047 aaaaggaaatgttgaagatgaaatggcaaattaatattatcctggtcactaaaatccatgggataatatttttcaacaagagtacatat 41959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 7626 - 7771
Alignment:
Q  1 catcaataattgactcggaactaatacatgcactaatttccctttaaatataaactgacatgttatccgctagaaacccaggtcccatcttgtttctcaa 100  Q
    ||||||||| | ||||  ||||||||| ||||||||||| |||||  |||||||| | |||| ||||   ||||||||||  ||| ||||||||||||||    
T  7626 catcaataactaactcataactaatacttgcactaattttcctttcgatataaaccgtcatgctatcatttagaaacccacttccaatcttgtttctcaa 7725  T
Q  101 cttaggcttaataattttcattgctaaaaaagatatttcagttgtg 146  Q
    | ||| ||| ||||| ||||||||| |||||||| | |||||||||    
T  7726 cctagtcttcataatcttcattgctgaaaaagatctctcagttgtg 7771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 92428 - 92373
Alignment:
Q  69 gctagaaacccaggtcccatcttgtttctcaacttaggcttaataattttcattgc 124  Q
    |||||| ||||||  |||||||||||||||||||| | ||| ||||||||||||||    
T  92428 gctagatacccagagcccatcttgtttctcaacttggacttgataattttcattgc 92373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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