View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0244_low_3 (Length: 539)

Name: NF0244_low_3
Description: NF0244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0244_low_3
NF0244_low_3
[»] chr5 (4 HSPs)
chr5 (30-230)||(9638638-9638837)
chr5 (411-533)||(9638332-9638454)
chr5 (282-361)||(9638504-9638583)
chr5 (308-350)||(9638381-9638423)
[»] chr1 (6 HSPs)
chr1 (115-230)||(1626663-1626776)
chr1 (436-485)||(15569580-15569629)
chr1 (308-350)||(15569581-15569623)
chr1 (439-477)||(40538796-40538834)
chr1 (72-230)||(52456365-52456523)
chr1 (436-485)||(15569725-15569774)
[»] chr2 (4 HSPs)
chr2 (72-209)||(3803998-3804138)
chr2 (436-487)||(34915232-34915284)
chr2 (440-487)||(38143052-38143099)
chr2 (107-177)||(13715777-13715847)
[»] chr3 (4 HSPs)
chr3 (436-480)||(20800992-20801036)
chr3 (436-473)||(20801136-20801173)
chr3 (436-489)||(14004704-14004757)
chr3 (107-209)||(23035269-23035372)
[»] chr7 (1 HSPs)
chr7 (107-178)||(22754434-22754505)
[»] chr4 (2 HSPs)
chr4 (124-193)||(27955143-27955212)
chr4 (436-472)||(17263674-17263710)
[»] scaffold0855 (1 HSPs)
scaffold0855 (125-230)||(1800-1900)
[»] scaffold0847 (1 HSPs)
scaffold0847 (125-230)||(1965-2065)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 9638837 - 9638638
Alignment:
Q  30 ataacacccccaacaaactggtgttaggctataactcagcctgttacttacattaatgatgttggtcatgatcatacatgtaatatggtagatagtgggt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  9638837 ataacacccccaacaaactggtgttaggctataactcagcctgttacttacattaatgatgttggtcatgatcatacctgtaatatggtagataatgggt 9638738  T
Q  130 caaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcatcttaaagattattcaaaacatacatcaaatcaaaca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9638737 caaaaatgtggcaagcaatgttagagtaggctgcttagttattctaattttgtaaatacctcatcttaaagattattc-aaacatacatcaaatcaaaca 9638639  T

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Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 411 - 533
Target Start/End: Complemental strand, 9638454 - 9638332
Alignment:
Q  411 agaaatgagaatccacgtgtcatgattgggcaatgtcatgtgacattcccaccacaatgtcacacaagtgaaatccagtagttcacccttctacattata 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9638454 agaaatgagaatccacgtgtcatgattgggcaatgtcatgtgacattcccaccacaatgtcacacaagtgaaatccagtagttcacccttctacattata 9638355  T
Q  511 tagacactttttagaataatcta 533  Q
    ||||||||||||||| |||||||    
T  9638354 tagacactttttagagtaatcta 9638332  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 282 - 361
Target Start/End: Complemental strand, 9638583 - 9638504
Alignment:
Q  282 atgtcttcttaagtaatagttcacaaatttcacttgtgtaacattgtggtgggaatatcacatgacatttgaaacataga 361  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||    
T  9638583 atgtcttcttaagtagtagttcacaaatttcacttgtgtaacattgtggtggaaatatcacgtgacatttgacacataga 9638504  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 9638381 - 9638423
Alignment:
Q  308 atttcacttgtgtaacattgtggtgggaatatcacatgacatt 350  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  9638381 atttcacttgtgtgacattgtggtgggaatgtcacatgacatt 9638423  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 1626663 - 1626776
Alignment:
Q  115 tggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcatcttaaagattattcaaaacat 214  Q
    |||||||||||||||||| |||||||||||||||||||| | ||| ||||||||| |||||||| | ||||||   |||  |||||| ||||||| |||     
T  1626663 tggtagatagtgggtcaacaatgtggcaagcaatgttagcggagg-tgcttagttgttctaagtctataaatataccattgtaaaga-tattcaacacac 1626760  T
Q  215 acatcaaatcaaacaa 230  Q
    ||||||||||||||||    
T  1626761 acatcaaatcaaacaa 1626776  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 436 - 485
Target Start/End: Complemental strand, 15569629 - 15569580
Alignment:
Q  436 ttgggcaatgtcatgtgacattcccaccacaatgtcacacaagtgaaatc 485  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15569629 ttggacaatgtcatgtgacattcccaccacaatgtcacacaagtgaaatc 15569580  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 15569581 - 15569623
Alignment:
Q  308 atttcacttgtgtaacattgtggtgggaatatcacatgacatt 350  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  15569581 atttcacttgtgtgacattgtggtgggaatgtcacatgacatt 15569623  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 477
Target Start/End: Original strand, 40538796 - 40538834
Alignment:
Q  439 ggcaatgtcatgtgacattcccaccacaatgtcacacaa 477  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  40538796 ggcaatgtcatgtgacatttccaccacaatgtcacacaa 40538834  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 230
Target Start/End: Original strand, 52456365 - 52456523
Alignment:
Q  72 gttacttacattaatgatgttggtcatgatcatacatg---taatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagt 168  Q
    |||||||| |||| ||||||| | ||||||| ||||||   ||||||| ||||||||   |||||||  ||| || |||||||||  || | ||||||||    
T  52456365 gttacttatattagtgatgttagccatgatcttacatgatataatatgatagatagtcattcaaaaacatggtaaacaatgttagcataagttgcttagt 52456464  T
Q  169 tattctaagtttgtaaatacctcatcttaaagattattcaaaacatacatcaaatcaaacaa 230  Q
    |||||||||| | ||| || ||||||  |||||||||||  || |||||||| |||||||||    
T  52456465 tattctaagtgtataacta-ctcatcgcaaagattattc--aagatacatcacatcaaacaa 52456523  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 485
Target Start/End: Original strand, 15569725 - 15569774
Alignment:
Q  436 ttgggcaatgtcatgtgacattcccaccacaatgtcacacaagtgaaatc 485  Q
    |||| ||||||||||||||||||||  |||||||| ||||||||| ||||    
T  15569725 ttggacaatgtcatgtgacattcccgtcacaatgtgacacaagtggaatc 15569774  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 209
Target Start/End: Original strand, 3803998 - 3804138
Alignment:
Q  72 gttacttacattaatgatgttggtcatgatcatacatgt---aatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagt 168  Q
    |||||||| |||| | ||||| ||||||||||| |||||   |||||||||| |||||| |||||| ||||||| | ||| || | | ||| ||||||||    
T  3803998 gttacttatattagtaatgttagtcatgatcattcatgttgaaatatggtagttagtggatcaaaattgtggcaggaaatttttggggaggttgcttagt 3804097  T
Q  169 tattctaagtttgtaaatacctcatcttaaagattattcaa 209  Q
    || ||||||| | ||||||||||||   |||||||||||||    
T  3804098 taatctaagtctataaatacctcattggaaagattattcaa 3804138  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 436 - 487
Target Start/End: Original strand, 34915232 - 34915284
Alignment:
Q  436 ttgggcaatgtcatgtgacattccc-accacaatgtcacacaagtgaaatcca 487  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  34915232 ttgggcaatgtcatgtgacattccccaccacaatgtcacacaagtggaatcca 34915284  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 487
Target Start/End: Original strand, 38143052 - 38143099
Alignment:
Q  440 gcaatgtcatgtgacattcccaccacaatgtcacacaagtgaaatcca 487  Q
    ||||||||||| ||||||||| |||||||||||||||| || ||||||    
T  38143052 gcaatgtcatgcgacattcccgccacaatgtcacacaactggaatcca 38143099  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 13715847 - 13715777
Alignment:
Q  107 atgtaatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaag 177  Q
    ||||||||||||||| |||| | |||||| || |||| ||||||||| ||| | | |||||||||||||||    
T  13715847 atgtaatatggtagaaagtgaggcaaaaacgttgcaaacaatgttagtgtacggttcttagttattctaag 13715777  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 436 - 480
Target Start/End: Complemental strand, 20801036 - 20800992
Alignment:
Q  436 ttgggcaatgtcatgtgacattcccaccacaatgtcacacaagtg 480  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  20801036 ttgggcaatgtcatctgacattcccaccacaatgtcacacaagtg 20800992  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 436 - 473
Target Start/End: Original strand, 20801136 - 20801173
Alignment:
Q  436 ttgggcaatgtcatgtgacattcccaccacaatgtcac 473  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20801136 ttgggcaatgtcatgtgacattcccaccacaatgtcac 20801173  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 436 - 489
Target Start/End: Complemental strand, 14004757 - 14004704
Alignment:
Q  436 ttgggcaatgtcatgtgacattcccaccacaatgtcacacaagtgaaatccagt 489  Q
    |||||||||| ||||| ||||| | |||||||||||||||||||| ||||||||    
T  14004757 ttgggcaatgacatgtaacatttctaccacaatgtcacacaagtggaatccagt 14004704  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 23035372 - 23035269
Alignment:
Q  107 atgtaatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcat-cttaaagattat 205  Q
    |||||||||||||||||||||| || ||| ||  ||||||| ||||  ||||| ||||| ||||||| |||| | ||||||| ||||  | |||||||||    
T  23035372 atgtaatatggtagatagtgggccataaacgttacaagcaacgttaatgtaggttgcttggttattcgaagtctataaatacgtcatggtaaaagattat 23035273  T
Q  206 tcaa 209  Q
    ||||    
T  23035272 tcaa 23035269  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 22754505 - 22754434
Alignment:
Q  107 atgtaatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagt 178  Q
    |||||| |||||||||||||||  |||||||||| |||||||||||| ||||| || ||||||||| |||||    
T  22754505 atgtaaaatggtagatagtgggcgaaaaatgtggaaagcaatgttagtgtaggttgtttagttattataagt 22754434  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 27955212 - 27955143
Alignment:
Q  124 gtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcat 193  Q
    ||||||||||||||||| || ||||||||| ||||| | |||||||| ||||||| | ||||||||||||    
T  27955212 gtgggtcaaaaatgtggaaaacaatgttagtgtaggttccttagttactctaagtgtataaatacctcat 27955143  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 472
Target Start/End: Complemental strand, 17263710 - 17263674
Alignment:
Q  436 ttgggcaatgtcatgtgacattcccaccacaatgtca 472  Q
    |||||||||||||||||||||||||||||||||||||    
T  17263710 ttgggcaatgtcatgtgacattcccaccacaatgtca 17263674  T

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Target: scaffold0855 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 230
Target Start/End: Original strand, 1800 - 1900
Alignment:
Q  125 tgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcatcttaaagattattcaaaacatacatcaaatc 224  Q
    |||||||| ||||||||||| |||||||| || || |||||||||||||||||  | |||||||| |||  |||||| |||||  |||| ||||||||||    
T  1800 tgggtcaacaatgtggcaagtaatgttagtgtcgg-tgcttagttattctaagcctataaatacc-cattgtaaaga-tattc--aacacacatcaaatc 1894  T
Q  225 aaacaa 230  Q
    ||||||    
T  1895 aaacaa 1900  T

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Target: scaffold0847 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 230
Target Start/End: Original strand, 1965 - 2065
Alignment:
Q  125 tgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcatcttaaagattattcaaaacatacatcaaatc 224  Q
    |||||||| ||||||||||| |||||||| || || |||||||||||||||||  | |||||||| |||  |||||| |||||  |||| ||||||||||    
T  1965 tgggtcaacaatgtggcaagtaatgttagtgtcgg-tgcttagttattctaagcctataaatacc-cattgtaaaga-tattc--aacacacatcaaatc 2059  T
Q  225 aaacaa 230  Q
    ||||||    
T  2060 aaacaa 2065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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