View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0244_low_5 (Length: 422)
Name: NF0244_low_5
Description: NF0244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0244_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 49583978 - 49583640
Alignment:
| Q |
1 |
gacgaaacaaaagctcacgttgccttgattcagtgaaaattttatgccctaagttgcatttcttgcttttgccttccctacatccacaccatctctgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49583978 |
gacgaaacaaaagctcacgttgccttgattcagtgaaaattttatgccctaagttgcatttcttgcttttcccttccctacatccacaccatctctgata |
49583879 |
T |
|
| Q |
101 |
tttgtaagacttacgaaattttccataatagaatgacaatatgtccttcatcttcttattgccgataaattttttcacttcaacgaagttcttcccaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49583878 |
tttgtaagacttacgaaattttccataatagaatgacaatatgtccttcatcttcttattgccgataaattttttcacttcaacgaagttcttcccaaat |
49583779 |
T |
|
| Q |
201 |
atatataaaccaaggactaaaccggcctcttcgatttcagtccagttgtcacttcgagagccaggaacaagaatctgccctttatgttcatgctcctcat |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49583778 |
atatataaaccaaggactaaaccggcctcttcaatttcagtccagttgtcacttcgagagccaggaacaagaatctgccctttatgttcatgctcctcat |
49583679 |
T |
|
| Q |
301 |
gcatcccaatctttgtttcttcccgaatatcataactct |
339 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
49583678 |
gcatcccaatctttgtttcttcccgaatatcataactct |
49583640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 123 - 287
Target Start/End: Complemental strand, 49589153 - 49588989
Alignment:
| Q |
123 |
ccataatagaatgacaatatgtccttcatcttcttattgccgataaattttttcacttcaacgaagttcttcccaaatatatataaaccaaggactaaac |
222 |
Q |
| |
|
|||||||||||||||| | | |||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||| |||| || |||||||||||| |
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|
| T |
49589153 |
ccataatagaatgacagtttatccttcattttcttattgcgtataaaccttttcacttgaacgaagttcttcccaaatgtataaaagccaaggactaaat |
49589054 |
T |
|
| Q |
223 |
cggcctcttcgatttcagtccagttgtcacttcgagagccaggaacaagaatctgccctttatgt |
287 |
Q |
| |
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|||||||||||||||||||||| | ||| ||| ||| ||| |||||||||||| |||||||||| |
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|
| T |
49589053 |
tggcctcttcgatttcagtccaggtatcagttcaagaaccatgaacaagaatcttccctttatgt |
49588989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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