View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0244_low_6 (Length: 403)
Name: NF0244_low_6
Description: NF0244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0244_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 43061805 - 43061999
Alignment:
| Q |
11 |
aatgaggttcacgatataaatctgatccaacaacacatataaa---acaaaaaacttcatattagcttctactaggcacgagctggaggagctccgggtc |
107 |
Q |
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| T |
43061805 |
aatgaggttcatgatataaatctgatccaacaacacaaaaaaagaaaaaaaaaacttcatattagcttcta---ggcacgggctggaggagcgcctggtc |
43061901 |
T |
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| Q |
108 |
cagcagggcgtggggcttgaccgggctggccgggcctgggtgtgtcatccttgaaaatgaattaagtaaaccaattagacaccgccaaatgaaatata |
205 |
Q |
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| T |
43061902 |
cagcagggcgtggggcttgaccgggctggccgggcctgggtgcatcatccttgaaaaataattaaataaaccgattagacaccaccaaataaaatata |
43061999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 45906743 - 45906839
Alignment:
| Q |
212 |
actcaactattga-catgcacttccaacaattttatagctaaagtcgttagaaaaacttgtttagtgtcatataagaaaatagttattgttagcatt |
307 |
Q |
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| T |
45906743 |
actcaactattgatcatgcacttccaacaattttatagctaaagtcgttagaaaaacttgtttagtgtcatataagaaaatagttactgttagcatt |
45906839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 43062015 - 43062072
Alignment:
| Q |
198 |
gaaatatagaagaaactcaactattga-catgcacttccaacaattttatagctaaag |
254 |
Q |
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| T |
43062015 |
gaaatatagaagaaactcaactactgataaagcacttccaacaatttcatagctaaag |
43062072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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