View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0245-INSERTION-1 (Length: 479)
Name: NF0245-INSERTION-1
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0245-INSERTION-1 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 21 - 472
Target Start/End: Original strand, 38569738 - 38570185
Alignment:
| Q |
21 |
gatcaacctgcagacattctcataaagtctttgtccaaacccaggttcatttacttgagagacaagaatggcctcaccaactgtgactccatcttgaggg |
120 |
Q |
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| T |
38569738 |
gatcaacctgcagacattctcataaagtctttgtccaaacccaggttcatttacttgagagacaagaatggcctcaccaactgggactccatcttgaggg |
38569837 |
T |
|
| Q |
121 |
ggcgtaatagcacataagcatcaatttgctacaacttgcactcatataagaatatttttcattcattgcattaacctcaatattgatatgataatatttg |
220 |
Q |
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| T |
38569838 |
ggcgtaatagcacataagcatcaatttgctacagcttgcactcatataagaatatttttcattcattgcattgacctcaatattgatatcataatatttg |
38569937 |
T |
|
| Q |
221 |
gcattcattacattgaccataattgtatcatattaggaagtattattaatttcctttcaatcacactaaacggtgattgtctgtttgtatctatataatg |
320 |
Q |
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| T |
38569938 |
gcattcattacattgaccataattgtatcatattaggaagtattattaatttcctttcaatcacactaaatggtgattgtctgtttgtatctatataatg |
38570037 |
T |
|
| Q |
321 |
taccttgtatcacatattgatatcaatacaataagttgaatttccttagtccaatccctacaacttctggagggactttcagggatataagaacttaggc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38570038 |
taccttgtatcacatattgatatcaatacaataagttgaatttccttagtccaatccctacaacttctggagggactttcagggatataagaacttcggc |
38570137 |
T |
|
| Q |
421 |
atatataaggactttccttccctcaagagcatgcaatgtaagggcaccattt |
472 |
Q |
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|||||||||| ||| |||||||||||||||||||||||| |||||||||| |
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| T |
38570138 |
--atataaggac-ttctttccctcaagagcatgcaatgtaa-ggcaccattt |
38570185 |
T |
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