View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0245-INSERTION-10 (Length: 655)
Name: NF0245-INSERTION-10
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0245-INSERTION-10 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 422 - 655
Target Start/End: Complemental strand, 35095881 - 35095650
Alignment:
| Q |
422 |
ccttcactatactttattattatggcaccatcattcttcatcactttcttcctttctattaatctcatcaacattgcttattgtatttctgacatagatt |
521 |
Q |
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| T |
35095881 |
ccttcactatattttattattatggcaccatcattcttcatcactttcttcttttctattaatctcatcaacattgcttattgtatttctgacatagatt |
35095782 |
T |
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| Q |
522 |
ctctccttaaaatttaaaaactctcttcaaaacaccgacgttgcattatcttcatggaatacatcccatgcctccatgtaatgctgataatgcaaattgg |
621 |
Q |
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| T |
35095781 |
ctctcctt-aaatttaaaaactctcttcaaaacaccgacgttgcattatcttcatggaatacat-ccatgcctccatgtaatgctgataatgcaaattgg |
35095684 |
T |
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| Q |
622 |
gcgggcgttctttgttacaaaggacatgtttggg |
655 |
Q |
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| T |
35095683 |
gcgggcgttctttgttacaaaggacatgtttggg |
35095650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 209 - 371
Target Start/End: Complemental strand, 35096094 - 35095932
Alignment:
| Q |
209 |
ttactctattattagctttgtttctttctgctccttgcgtttgtttctctttctcctccatctcaaaaatatgcaattccatctctctccaccttccatt |
308 |
Q |
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| T |
35096094 |
ttactctattattagctttgtttctttctgctccttgcgtttgtttctctttctcctccatctcaaaaatatgcaattccatctctctccaccttccata |
35095995 |
T |
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| Q |
309 |
gctgttcttgatcaacctcagtaacatctcatcttccttctatcgctgcacgccgcaccttaa |
371 |
Q |
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| T |
35095994 |
gctgttcttgatcaacctcagtaacatctcatcttccttctagcgctgcacgccgcaccttaa |
35095932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 35095634 - 35095481
Alignment:
| Q |
4 |
acatgaaccttaaaggctacattgacatcgattccatcaaggatttaccgtatatcagaaccattagcttagtgaacaaccaattcgataccacatggcc |
103 |
Q |
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| T |
35095634 |
acatgaaccttaaaggcaacattgacatcgattccatcaaggatttaccgtatatcagaaccattagcttaatgaacaaccaattcgataccacatggcc |
35095535 |
T |
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| Q |
104 |
aggcctaaacaaactcaccggtcttaagaacatttacctttctaataataaatt |
157 |
Q |
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| T |
35095534 |
aggcctaaacaaactcaccggtcttaagaacatttacctttctaataataaatt |
35095481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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