View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Alignment Overview
Query: NF0245-INSERTION-11 (Length: 592)
Name: NF0245-INSERTION-11
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 139 - 357
Target Start/End: Original strand, 25663846 - 25664064
Alignment:
| Q | 139 | gttttatgcttttgcaagatgttccaagcattttgaagctcgttttacaataatgcaaaataacaaaatcttatgctttttatctagaaatgatcttgtt | 238 | Q |
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| T | 25663846 | gttttatgcttttgcaagatattccaagcattttgaagttcgttttacaataatgcaaaataacaaaatcttatgccttttatctagaaatgatcttctt | 25663945 | T |
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| Q | 239 | tcgatgttttatggtgtttggcgatgaaaaatttgttctttatgataacgacataaaaataaaattactatcaaagaaagtaagaattagtttttctttt | 338 | Q |
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| T | 25663946 | tcgatgttttatggtgttttgcgatgaaaaatttgttctttatgatgacaacataaaaataaaattactatcaaagaaagtaagaattagtttttctttt | 25664045 | T |
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| Q | 339 | aggatttatatatgattat | 357 | Q |
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| T | 25664046 | aggatttatatatgattat | 25664064 | T |
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Target: chr5; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 478 - 592
Target Start/End: Original strand, 25664174 - 25664288
Alignment:
| Q | 478 | caaaggtcgagaagttaattataaaagaataaattataatgattagcgagtatcttacgttaccctttccctaatcgttgtaaacacaattttaataatg | 577 | Q |
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| T | 25664174 | caaaggttgagaagttaattataaaagaataaattataatgattagcgagtatcttacgttaccctttccataatcgttctaaacacaattttaataatg | 25664273 | T |
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| Q | 578 | atagttttcatttta | 592 | Q |
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| T | 25664274 | atagttttcatttta | 25664288 | T |
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Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 25664398 - 25664461
Alignment:
| Q | 1 | atacaaagagttgaaaatatgtataaaataatcaagtttgtttatgctatgattatcttaaatt | 64 | Q |
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| T | 25664398 | atacaaagagttgaaaatatgtataaaataatcaagtttgtttatgctatgattatcttaaatt | 25664461 | T |
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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 25663748 - 25663800
Alignment:
| Q | 64 | tgcaagatgtccaaacaatttgaaagtgacttattaaggggggaatatgagcttgaa | 120 | Q |
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| T | 25663748 | tgcaagatgtccaaacaatttgaaagtgac----taaggggggaacatgagcttgaa | 25663800 | T |
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 53247494 - 53247573
Alignment:
| Q | 181 | ttttacaataatgcaaaataacaaaatcttatgctttttatctagaaatgatcttgtttcgatgttttatggtgtttggc | 260 | Q |
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| T | 53247494 | ttttactatgatgcaaaataacaaaagctgatactttttatttttaaatgctcttcgtccgatgttttatggtgtttggc | 53247573 | T |
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