View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0245-INSERTION-12 (Length: 529)
Name: NF0245-INSERTION-12
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0245-INSERTION-12 |
 | |
|
| [»] scaffold0078 (6 HSPs) |
| |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] scaffold0184 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0078 (Bit Score: 390; Significance: 0; HSPs: 6)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 56 - 529
Target Start/End: Original strand, 2067 - 2535
Alignment:
| Q |
56 |
gaattctccaaaagattagtcacaaatcatccaaattttcatgtcacttgcatcattccctcacttggttcactaccagattcatcaaaatcatacctta |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2067 |
gaattctccaaaagattagtcacaaatcatcaaaattttcatgttacttgcatcattcccacacttggttcactaccagattcatcaaaatcataccttg |
2166 |
T |
|
| Q |
156 |
aaacaattccaccaaacataaacttagtttttcttccaccaatcaataaacaagacttacctcaaggagtatacccaggaatcctaatgcaactcacagt |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2167 |
aaacaattccaccaaacataaacttagtttttcttccaccaatcaataaacaagacttacctcaaggagtatacccaggaatcctaattcaactcacagt |
2266 |
T |
|
| Q |
256 |
tacacgctctctaccatcaatttaccaagctctcaaatcaataaattcaaaagcacctttagttgctataattgctgataaatttgcattggaagcacta |
355 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2267 |
tacactctctctaccatcaattcatcaagctctcaaatcaataaattcaaaagcacctttagttgctataattgctgataaatttgcattggaagcacta |
2366 |
T |
|
| Q |
356 |
gattttgctaaagagttcaattctttgtcttacgtttacttcccttgttcagctttttgtactttctttttakttacattggccaaaaacttgatgaara |
455 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||| | |
|
|
| T |
2367 |
gattttgctaaagagttcaattcttcgtcttacgtttacttcccttgttcagc-ttttgtactttctttttatttacattggcc-aaaacttgatgaaga |
2464 |
T |
|
| Q |
456 |
ggtttcatgtaaatacaaaagatttacaagaaccctataaagttacaagggatgtgtaccaatcaatggtattg |
529 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
2465 |
ggtttcatgtaaatac-aaagatttacaagaa-cctataaagttacaa-ggatgtgtaccaattaatggtattg |
2535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 56 - 529
Target Start/End: Original strand, 21324 - 21792
Alignment:
| Q |
56 |
gaattctccaaaagattagtcacaaatcatccaaattttcatgtcacttgcatcattccctcacttggttcactaccagattcatcaaaatcatacctta |
155 |
Q |
| |
|
|||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21324 |
gaattcaccaaaagattagtcacaaaccacccaaattttcatgtcacttgcatcattccttcacttggttcaccaccagattcatcaaaatcataccttg |
21423 |
T |
|
| Q |
156 |
aaacaattccaccaaacataaacttagtttttcttccaccaatcaataaacaagacttacctcaaggagtatacccaggaatcctaatgcaactcacagt |
255 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||||||| | ||||| ||||||||||| |
|
|
| T |
21424 |
aaacaattccaccaaacataaactcaatttttcttccaccaatcaacaaacaagacttacctcaaggagtacacccaggagttctaattcaactcacagt |
21523 |
T |
|
| Q |
256 |
tacacgctctctaccatcaatttaccaagctctcaaatcaataaattcaaaagcacctttagttgctataattgctgataaatttgcattggaagcacta |
355 |
Q |
| |
|
||||| |||||||||||||||| | ||||| | |||| ||| ||||||| |||| |||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
21524 |
tacacactctctaccatcaattcatcaagccttagaatccttaacttcaaaaacaccattagttgctataattgctgatacttttgcatttgaagcacta |
21623 |
T |
|
| Q |
356 |
gattttgctaaagagttcaattctttgtcttacgtttacttcccttgttcagctttttgtactttctttttakttacattggccaaaaacttgatgaara |
455 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||| ||||||||| | |||||||||||| || ||||||| ||| ||||||||||||| | |
|
|
| T |
21624 |
gattttgcaaaagagttcaattctttgtcttacctttactttccttgttcatc-ttttgtactttcacttcttttacatttgcc-aaaacttgatgaaga |
21721 |
T |
|
| Q |
456 |
ggtttcatgtaaatacaaaagatttacaagaaccctataaagttacaagggatgtgtaccaatcaatggtattg |
529 |
Q |
| |
|
| |||||||| ||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21722 |
gttttcatgtgaatac-aaagatttacaagaa-cctataaagttacaaggg-tgtgtaccaatcaatggtattg |
21792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 56 - 529
Target Start/End: Original strand, 56610 - 57078
Alignment:
| Q |
56 |
gaattctccaaaagattagtcacaaatcatccaaattttcatgtcacttgcatcattccctcacttggttcactaccagattcatcaaaatcatacctta |
155 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
56610 |
gaattctccaaaagattagttacaaaccatccaaattttcatgtcacttgcatcattccttcacttggttcaccaccagattcatcaaaatcatatcttg |
56709 |
T |
|
| Q |
156 |
aaacaattccaccaaacataaacttagtttttcttccaccaatcaataaacaagacttacctcaaggagtatacccaggaatcctaatgcaactcacagt |
255 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| || || |||| || || |
|
|
| T |
56710 |
aaacaattccaccaaacataaactcaatttttcttccaccaatcaacaaacaagacttacctcaaggagtatatccagcaattctgattcaacaaactgt |
56809 |
T |
|
| Q |
256 |
tacacgctctctaccatcaatttaccaagctctcaaatcaataaattcaaaagcacctttagttgctataattgctgataaatttgcattggaagcacta |
355 |
Q |
| |
|
||||| |||||||||||||||| | |||||||| |||||| | ||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |
|
|
| T |
56810 |
tacactctctctaccatcaattcatcaagctcttaaatcattgaattcaaaagcacctttagttgctataattgctgatatttttgctcaagaaacacta |
56909 |
T |
|
| Q |
356 |
gattttgctaaagagttcaattctttgtcttacgtttacttcccttgttcagctttttgtactttctttttakttacattggccaaaaacttgatgaara |
455 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||| |||||||||||| |||||| |||||||||||| || |||||| || || ||||||||| | |
|
|
| T |
56910 |
gattttgcaaaagagttcaactctttgttttatctttacttcccttcttcagc-ttttgtactttcacttgttttacatattcc-caatcttgatgaaga |
57007 |
T |
|
| Q |
456 |
ggtttcatgtaaatacaaaagatttacaagaaccctataaagttacaagggatgtgtaccaatcaatggtattg |
529 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||| ||||||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
57008 |
ggtttcatgtgaatac-aaagatttaaaagaa-cctataaagttacaa-ggatgtttgccaatcaatggtattg |
57078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 3040 - 3100
Alignment:
| Q |
1 |
aagttgaaatactaaagcaaaattcagttggtggatttttaagtcattgtggttggaattc |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3040 |
aagttgaaatactaaagcaaaattcagttggtggatttttaagtcattgtggttggaattc |
3100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 57583 - 57643
Alignment:
| Q |
1 |
aagttgaaatactaaagcaaaattcagttggtggatttttaagtcattgtggttggaattc |
61 |
Q |
| |
|
||||||||||||| || || | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
57583 |
aagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattc |
57643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22294 - 22354
Alignment:
| Q |
1 |
aagttgaaatactaaagcaaaattcagttggtggatttttaagtcattgtggttggaattc |
61 |
Q |
| |
|
||||| ||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22294 |
aagttcaaatacttaaggaaaagtcagttggtggatttttaagtcattgtggatggaattc |
22354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 56 - 529
Target Start/End: Original strand, 16565723 - 16566191
Alignment:
| Q |
56 |
gaattctccaaaagattagtcacaaatcatccaaattttcatgtcacttgcatcattccctcacttggttcactaccagattcatcaaaatcatacctta |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
16565723 |
gaattctccaaaagattagtcacaaatcatccaaattttcatgtcacttgcatcattccctcacttggttcactgcaagattcatcaaaatcataccttg |
16565822 |
T |
|
| Q |
156 |
aaacaattccaccaaacataaacttagtttttcttccaccaatcaataaacaagacttacctcaaggagtatacccaggaatcctaatgcaactcacagt |
255 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16565823 |
aaacagttccaccaaacataaacttagtttttcttccaccaatcaataaacaagacttacctcaaggagtatacccaggaatcctaattcaactcacagt |
16565922 |
T |
|
| Q |
256 |
tacacgctctctaccatcaatttaccaagctctcaaatcaataaattcaaaagcacctttagttgctataattgctgataaatttgcattggaagcacta |
355 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
16565923 |
tacacgctctctaccatcaattcatcaagctctcaaatcaataaattcaaaagcacctttagttgctataattgctgataattttgcatgggaagcacta |
16566022 |
T |
|
| Q |
356 |
gattttgctaaagagttcaattctttgtcttacgtttacttcccttgttcagctttttgtactttctttttakttacattggccaaaaacttgatgaara |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||| | |
|
|
| T |
16566023 |
gattttgctaaagagttcaattctttgtcttatgtttacttcccttgttcagc-ttttgtactttctttttatttacattggcc-aaaacttgatgaaga |
16566120 |
T |
|
| Q |
456 |
ggtttcatgtaaatacaaaagatttacaagaaccctataaagttacaagggatgtgtaccaatcaatggtattg |
529 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
16566121 |
ggtttcatgtaaatac-aaagatttacaagaa-cctataaagttacaa-ggatgtgtaccaattaatggtattg |
16566191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 56 - 529
Target Start/End: Complemental strand, 16599939 - 16599471
Alignment:
| Q |
56 |
gaattctccaaaagattagtcacaaatcatccaaattttcatgtcacttgcatcattccctcacttggttcactaccagattcatcaaaatcatacctta |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
16599939 |
gaattctccaaaagattagtcacaaatcatccaaattttcatgtcacttgcatcattccctcacttggttcactgcaagattcatcaaaatcataccttg |
16599840 |
T |
|
| Q |
156 |
aaacaattccaccaaacataaacttagtttttcttccaccaatcaataaacaagacttacctcaaggagtatacccaggaatcctaatgcaactcacagt |
255 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16599839 |
aaacagttccaccaaacataaacttagtttttcttccaccaatcaataaacaagacttacctcaaggagtatacccaggaatcctaattcaactcacagt |
16599740 |
T |
|
| Q |
256 |
tacacgctctctaccatcaatttaccaagctctcaaatcaataaattcaaaagcacctttagttgctataattgctgataaatttgcattggaagcacta |
355 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
16599739 |
tacacgctctctaccatcaattcatcaagctctcaaatcaataaattcaaaagcacctttagttgctataattgctgataattttgcatgggaagcacta |
16599640 |
T |
|
| Q |
356 |
gattttgctaaagagttcaattctttgtcttacgtttacttcccttgttcagctttttgtactttctttttakttacattggccaaaaacttgatgaara |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||| | |
|
|
| T |
16599639 |
gattttgctaaagagttcaattctttgtcttatgtttacttcccttgttcagc-ttttgtactttctttttatttacattggcc-aaaacttgatgaaga |
16599542 |
T |
|
| Q |
456 |
ggtttcatgtaaatacaaaagatttacaagaaccctataaagttacaagggatgtgtaccaatcaatggtattg |
529 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
16599541 |
ggtttcatgtaaatac-aaagatttacaagaa-cctataaagttacaa-ggatgtgtaccaattaatggtattg |
16599471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 16566696 - 16566756
Alignment:
| Q |
1 |
aagttgaaatactaaagcaaaattcagttggtggatttttaagtcattgtggttggaattc |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16566696 |
aagttgaaatactaaagcaaaattcagttggtggatttttaagtcattgtggttggaattc |
16566756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 16598966 - 16598906
Alignment:
| Q |
1 |
aagttgaaatactaaagcaaaattcagttggtggatttttaagtcattgtggttggaattc |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16598966 |
aagttgaaatactaaagcaaaattcagttggtggatttttaagtcattgtggttggaattc |
16598906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 56 - 529
Target Start/End: Complemental strand, 16234 - 15766
Alignment:
| Q |
56 |
gaattctccaaaagattagtcacaaatcatccaaattttcatgtcacttgcatcattccctcacttggttcactaccagattcatcaaaatcatacctta |
155 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
16234 |
gaattctccaaaagattagttacaaaccatccaaattttcatgtcacttgcatcattccttcacttggttcaccaccagattcatcaaaatcatatcttg |
16135 |
T |
|
| Q |
156 |
aaacaattccaccaaacataaacttagtttttcttccaccaatcaataaacaagacttacctcaaggagtatacccaggaatcctaatgcaactcacagt |
255 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| || || |||| || || |
|
|
| T |
16134 |
aaacaattccaccaaacataaactcaatttttcttccaccaatcaacaaacaagacttacctcaaggagtatatccagcaattctgattcaacaaactgt |
16035 |
T |
|
| Q |
256 |
tacacgctctctaccatcaatttaccaagctctcaaatcaataaattcaaaagcacctttagttgctataattgctgataaatttgcattggaagcacta |
355 |
Q |
| |
|
||||| |||||||||||||||| | |||||||| |||||| | ||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |
|
|
| T |
16034 |
tacactctctctaccatcaattcatcaagctcttaaatcattgaattcaaaagcacctttagttgctataattgctgatatttttgctcaagaaacacta |
15935 |
T |
|
| Q |
356 |
gattttgctaaagagttcaattctttgtcttacgtttacttcccttgttcagctttttgtactttctttttakttacattggccaaaaacttgatgaara |
455 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||| |||||||||||| |||||| |||||||||||| || |||||| || || ||||||||| | |
|
|
| T |
15934 |
gattttgcaaaagagttcaactctttgttttatctttacttcccttcttcagc-ttttgtactttcacttgttttacatattcc-caatcttgatgaaga |
15837 |
T |
|
| Q |
456 |
ggtttcatgtaaatacaaaagatttacaagaaccctataaagttacaagggatgtgtaccaatcaatggtattg |
529 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||| ||||||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
15836 |
ggtttcatgtgaatac-aaagatttaaaagaa-cctataaagttacaa-ggatgtttgccaatcaatggtattg |
15766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 15261 - 15201
Alignment:
| Q |
1 |
aagttgaaatactaaagcaaaattcagttggtggatttttaagtcattgtggttggaattc |
61 |
Q |
| |
|
||||||||||||| || || | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15261 |
aagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattc |
15201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 2015868 - 2015824
Alignment:
| Q |
82 |
tcatccaaattttcatgtcacttgcatcattccctcacttggttc |
126 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
2015868 |
tcatccaaactttcatgtcacatgcttcattccctcacttggttc |
2015824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 1962561 - 1962605
Alignment:
| Q |
82 |
tcatccaaattttcatgtcacttgcatcattccctcacttggttc |
126 |
Q |
| |
|
||||||| | ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
1962561 |
tcatccatactttcatgtcacatgcttcattccctcacttggttc |
1962605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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