View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0245-INSERTION-13 (Length: 522)
Name: NF0245-INSERTION-13
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0245-INSERTION-13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 47637184 - 47636663
Alignment:
| Q |
1 |
attgacaaagttaattgaaattgatataaggatcaaaatgagcatacaatatttagtgttgcgacggaagagtcaagttcatctggatgcattgtgtcgg |
100 |
Q |
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| T |
47637184 |
attgacaaagttaattgaaattgatataaggatcaaaatgagcatacaatatttagtgttgcgacggaagagtcaagttcatctggatgcattgtgtcag |
47637085 |
T |
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| Q |
101 |
tgctatttacacctgaaaactgcggtgctgaggcattgcttcctttggaacccaaagcaactttatttccgacgttgttaactagctctccttgatctac |
200 |
Q |
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| T |
47637084 |
tgctatttacacctgaaaactgtggtgctgaggcattgcttcctttggaccccaaagcaactttatttccgacgttgttaactagctctccttgatccac |
47636985 |
T |
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| Q |
201 |
atacgtcagggaaagctcgtcatattttctctgaataaactcccaaagagaaaaaggataagtagtaagtacgaaatcacaaatgaatagagaagcgagc |
300 |
Q |
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| T |
47636984 |
atacgtcagggaaagctcgtcatattttctctgaataaactcccaaagagaaaaaggataagtagtaagtacgaaatcacaaatgaatagagaagcgagc |
47636885 |
T |
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| Q |
301 |
ttaagctgcaattttatagatcctaaacagcattaagttgaatataaaacgtatttgaaggcgaacaccagttgatcctttcattggggggtaaaccata |
400 |
Q |
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| T |
47636884 |
ttaagctgcaattttatagatcctaaacagcattaagttgaatataaaacgtatttgaaggcgaacaccggttgatcctttcatt-ggggataaaccata |
47636786 |
T |
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| Q |
401 |
acagaagcgagaacataaaagtctacatgctgtaggcatgtaaacacgacttcctatcttctgcaccagcttttacttgg-aaacactctaagagaaaat |
499 |
Q |
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| T |
47636785 |
acagaagcgagaacataaaagtctacatgctgtaggcatgtaaacatgacttcctatcttctgcactagctattacttggtaaacattctaagagaaaat |
47636686 |
T |
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| Q |
500 |
cctattccactcatctccaccag |
522 |
Q |
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| T |
47636685 |
cctattccactcatctccaccag |
47636663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 487 - 522
Target Start/End: Complemental strand, 47636626 - 47636591
Alignment:
| Q |
487 |
tctaagagaaaatcctattccactcatctccaccag |
522 |
Q |
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| T |
47636626 |
tctaagagaaaatcctattccactcatctccaccag |
47636591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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