View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0245-INSERTION-15 (Length: 414)

Name: NF0245-INSERTION-15
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0245-INSERTION-15
NF0245-INSERTION-15
[»] chr8 (12 HSPs)
chr8 (132-414)||(29192253-29192530)
chr8 (12-67)||(15175276-15175334)
chr8 (12-94)||(26600870-26600957)
chr8 (14-66)||(14636688-14636740)
chr8 (12-67)||(11175383-11175440)
chr8 (12-94)||(43120788-43120875)
chr8 (25-65)||(32350866-32350906)
chr8 (25-65)||(32367527-32367567)
chr8 (380-414)||(10668359-10668393)
chr8 (25-65)||(4187330-4187370)
chr8 (25-94)||(26916303-26916374)
chr8 (25-65)||(35170832-35170872)
[»] chr2 (11 HSPs)
chr2 (19-137)||(7818213-7818333)
chr2 (337-414)||(33633718-33633795)
chr2 (14-94)||(1130820-1130902)
chr2 (229-278)||(33633622-33633671)
chr2 (25-94)||(83575-83646)
chr2 (25-94)||(10221533-10221604)
chr2 (14-94)||(41959698-41959783)
chr2 (25-67)||(9298847-9298889)
chr2 (39-94)||(33428792-33428849)
chr2 (19-67)||(17200620-17200668)
chr2 (14-94)||(21437118-21437201)
[»] chr1 (10 HSPs)
chr1 (13-60)||(4080459-4080506)
chr1 (22-94)||(15183855-15183929)
chr1 (12-94)||(31165652-31165739)
chr1 (25-65)||(27458307-27458347)
chr1 (28-68)||(37126623-37126663)
chr1 (25-94)||(48496985-48497056)
chr1 (13-67)||(14578491-14578548)
chr1 (19-65)||(26801272-26801318)
chr1 (25-94)||(11580625-11580696)
chr1 (12-67)||(31065174-31065232)
[»] chr3 (6 HSPs)
chr3 (25-90)||(33282684-33282749)
chr3 (14-94)||(36260816-36260897)
chr3 (12-94)||(29306198-29306285)
chr3 (12-94)||(16194305-16194392)
chr3 (15-61)||(51490583-51490629)
chr3 (25-65)||(43369819-43369859)
[»] chr4 (9 HSPs)
chr4 (25-65)||(24194918-24194958)
chr4 (13-96)||(51906021-51906109)
chr4 (25-94)||(35292908-35292979)
chr4 (12-66)||(867537-867594)
chr4 (14-62)||(23441568-23441618)
chr4 (13-94)||(56094348-56094435)
chr4 (29-65)||(2295060-2295096)
chr4 (25-94)||(13204804-13204875)
chr4 (33-94)||(25856982-25857045)
[»] chr5 (2 HSPs)
chr5 (12-67)||(33401543-33401598)
chr5 (31-94)||(994877-994942)
[»] chr6 (3 HSPs)
chr6 (14-67)||(23888238-23888291)
chr6 (14-67)||(18130573-18130626)
chr6 (12-67)||(2391396-2391454)
[»] chr7 (3 HSPs)
chr7 (14-65)||(33407196-33407248)
chr7 (25-65)||(34595959-34595999)
chr7 (14-65)||(38582301-38582355)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 132 - 414
Target Start/End: Complemental strand, 29192530 - 29192253
Alignment:
Q  132 caattgttgcaactaggttttagaagtccctcaacggtaatgtgattgcaattacggccaaattgatgaaatgcacatcaagaactaatttacg-accaa 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| || ||    
T  29192530 caattgttgcaactaggttttagaagtccctcaacggtaatgtaattgcaattacggccaaattaatgaaatgtacatcaagaactaatttacgaactaa 29192431  T
Q  231 tctgattatttaatcggtgtaaatcactttgaatatatcaactaacaacatcttaagcaaaataatcatgtagtnnnnnnnnnnnnnnnntctgacctgg 330  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||                ||||||||||    
T  29192430 tctgattatttaatcggtgtaaatcactttgaatatatcaattaacaacatcttaagcaaaataatcatgtagt------aaaaaaaaaatctgacctgg 29192337  T
Q  331 cctcgagaatctctgtaactaacaagcacagttctaattcccctagcaggaaatccaggatcacacgatacttgaggccacgag 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29192336 cctcgagaatctctgtaactaacaagcacagttctaattcccctagcaggaaatccaggatcacacgatacttgaggccacgag 29192253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 15175276 - 15175334
Alignment:
Q  12 gaaattcaaaaacaaga---agaaaatgtgagtaagtaatcatgtttgatgtcataagc 67  Q
    |||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||    
T  15175276 gaaattcaaaaacaagaagaagaaaatgtgtgtaagtaatcatgtttgatgtcataagc 15175334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 26600957 - 26600870
Alignment:
Q  12 gaaattcaaaaacaagaagaa---aatgtgagtaagtaatcatgtttgatgtcataag--cttctgaacctaccacctcaatgttaaa 94  Q
    |||||||||||||||||||||   ||||||  ||||||||||||||||||||||||||  ||| || |||||||| || |||||||||    
T  26600957 gaaattcaaaaacaagaagaagaaaatgtgtataagtaatcatgtttgatgtcataagcacttttggacctaccatcttaatgttaaa 26600870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 14636740 - 14636688
Alignment:
Q  14 aattcaaaaacaagaagaaaatgtgagtaagtaatcatgtttgatgtcataag 66  Q
    |||||||||||||||||||||||   |||| ||||||||||||||||||||||    
T  14636740 aattcaaaaacaagaagaaaatgcatgtaactaatcatgtttgatgtcataag 14636688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 11175440 - 11175383
Alignment:
Q  12 gaaattcaaaaacaagaagaaaatgtgagta--agtaatcatgtttgatgtcataagc 67  Q
    |||||||||||| |||||||||||||| |||  | |||||||||||||||||||||||    
T  11175440 gaaattcaaaaataagaagaaaatgtgtgtataaataatcatgtttgatgtcataagc 11175383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 43120788 - 43120875
Alignment:
Q  12 gaaattcaaaaacaaga---agaaaatgtgagtaagtaatcatgtttgatgtcataag--cttctgaacctaccacctcaatgttaaa 94  Q
    |||||||||||||||||   ||||||||||  |||||||||||||||||| |||||||  ||| || |||||||| || |||||||||    
T  43120788 gaaattcaaaaacaagaagaagaaaatgtgtataagtaatcatgtttgatatcataagcacttttggacctaccatcttaatgttaaa 43120875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 32350906 - 32350866
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataa 65  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  32350906 aagaagaaaatgtgtataagtaatcatgtttgatgtcataa 32350866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 32367567 - 32367527
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataa 65  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  32367567 aagaagaaaatgtgtataagtaatcatgtttgatgtcataa 32367527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 414
Target Start/End: Original strand, 10668359 - 10668393
Alignment:
Q  380 gaaatccaggatcacacgatacttgaggccacgag 414  Q
    ||||||||||||||||| |||||||||||||||||    
T  10668359 gaaatccaggatcacacaatacttgaggccacgag 10668393  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 4187370 - 4187330
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataa 65  Q
    ||||||| |||||  ||||||||||||||||||||||||||    
T  4187370 aagaagataatgtatgtaagtaatcatgtttgatgtcataa 4187330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 26916303 - 26916374
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataa--gcttctgaacctaccacctcaatgttaaa 94  Q
    ||||||||||| || || |||||||||| ||||||||||||   ||| |||||||||||||| ||| |||||    
T  26916303 aagaagaaaatatgcgttagtaatcatggttgatgtcataaacacttttgaacctaccaccttaattttaaa 26916374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 35170872 - 35170832
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataa 65  Q
    ||||||||||||||  ||||||||||| |||||||||||||    
T  35170872 aagaagaaaatgtgtataagtaatcatctttgatgtcataa 35170832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 7818213 - 7818333
Alignment:
Q  19 aaaaacaagaagaaaatgtgagtaagtaatcatgtttgatgtcataagcttctgaacctaccacctcaatgttaaaatggat--aacaatataattacta 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||  || |||||||||| ||    
T  7818213 aaaaacaagaagaaaatgtgagtaagtaatcatatttgatgtcataagcttttgaacctatcacctcaatgttaaaatggataaaaaaatataattatta 7818312  T
Q  117 tatggcttaaacggtcaattg 137  Q
    ||||||||||| |||||||||    
T  7818313 tatggcttaaatggtcaattg 7818333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 337 - 414
Target Start/End: Original strand, 33633718 - 33633795
Alignment:
Q  337 gaatctctgtaactaacaagcacagttctaattcccctagcaggaaatccaggatcacacgatacttgaggccacgag 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33633718 gaatctctgtaactaacaagcacagttctaattcccctagcaggaaatccaggatcacacgatacttgaggccacgag 33633795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 1130820 - 1130902
Alignment:
Q  14 aattcaaaaacaagaagaaaatgtgagtaagtaatcatgtttgatgtcataag--cttctgaacctaccacctcaatgttaaa 94  Q
    |||||||||||||||| |||||||| ||||| |||||||||| ||||||||||  ||| || || |||||| |||||||||||    
T  1130820 aattcaaaaacaagaacaaaatgtgcgtaagaaatcatgttttatgtcataagcacttttggacttaccacttcaatgttaaa 1130902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 33633622 - 33633671
Alignment:
Q  229 aatctgattatttaatcggtgtaaatcactttgaatatatcaactaacaa 278  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  33633622 aatctgattatttaatcggtgaaaatcactttggatatatcaattaacaa 33633671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 83646 - 83575
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataa--gcttctgaacctaccacctcaatgttaaa 94  Q
    ||||||||||||||  |||| |||||||||||||| |||||   ||| || |||||||||||||||||||||    
T  83646 aagaagaaaatgtgcataagcaatcatgtttgatgacataaacacttttggacctaccacctcaatgttaaa 83575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 10221604 - 10221533
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataagc--ttctgaacctaccacctcaatgttaaa 94  Q
    ||||||||||||||  |||||||||||||||||| ||||||||  || | ||||||||| || |||||||||    
T  10221604 aagaagaaaatgtgtataagtaatcatgtttgatatcataagcattttttaacctaccatcttaatgttaaa 10221533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 41959783 - 41959698
Alignment:
Q  14 aattcaaaaacaagaaga---aaatgtgagtaagtaatcatgtttgatgtcataagc--ttctgaacctaccacctcaatgttaaa 94  Q
    ||||||||||||||||||   |||||||||| ||||||||| |||||| ||||| ||  || | ||||||||| ||||||||||||    
T  41959783 aattcaaaaacaagaagaggaaaatgtgagtgagtaatcatatttgatatcatatgcatttttcaacctaccatctcaatgttaaa 41959698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 9298847 - 9298889
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataagc 67  Q
    ||||||||||||||  |||||||||||| ||||||||||||||    
T  9298847 aagaagaaaatgtgtataagtaatcatgattgatgtcataagc 9298889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 33428849 - 33428792
Alignment:
Q  39 agtaagtaatcatgtttgatgtcataa--gcttctgaacctaccacctcaatgttaaa 94  Q
    ||||||||||||| |||||||||||||   ||| ||||| ||||||||||||||||||    
T  33428849 agtaagtaatcatatttgatgtcataaacacttttgaacataccacctcaatgttaaa 33428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 17200668 - 17200620
Alignment:
Q  19 aaaaacaagaagaaaatgtgagtaagtaatcatgtttgatgtcataagc 67  Q
    |||||||||||||||||||| |||||||||| || ||| |||| |||||    
T  17200668 aaaaacaagaagaaaatgtgtgtaagtaatcgtgattgctgtcttaagc 17200620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 21437118 - 21437201
Alignment:
Q  14 aattcaaaaacaagaagaaaa-tgtgagtaagtaatcatgtttgatgtcat--aagcttctgaacctaccacctcaatgttaaa 94  Q
    |||||||||| |||||||||| | ||  |||||||||||||||||||||||  |  ||| ||||||||||| || |||||||||    
T  21437118 aattcaaaaataagaagaaaaatatgtataagtaatcatgtttgatgtcatcaatacttttgaacctaccatcttaatgttaaa 21437201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 4080459 - 4080506
Alignment:
Q  13 aaattcaaaaacaagaagaaaatgtgagtaagtaatcatgtttgatgt 60  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  4080459 aaattcaaaaacaagaagaaaatatgagtaactaatcatgtttgatgt 4080506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 15183855 - 15183929
Alignment:
Q  22 aacaagaagaaaatgtgagtaagtaatcatgtttgatgtcataag--cttctgaacctaccacctcaatgttaaa 94  Q
    ||||||||||||||||| | |||||||||||||||||||||||||  ||| || |||||||| || |||||||||    
T  15183855 aacaagaagaaaatgtgcgcaagtaatcatgtttgatgtcataagcacttttggacctaccatcttaatgttaaa 15183929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 31165739 - 31165652
Alignment:
Q  12 gaaattcaaaaacaagaagaa---aatgtgagtaagtaatcatgtttgatgtcataag--cttctgaacctaccacctcaatgttaaa 94  Q
    |||||||||||||||||||||   ||||||  ||||||||||||||||||||||||||  ||| || |||||||| || |||||||||    
T  31165739 gaaattcaaaaacaagaagaagaaaatgtgtataagtaatcatgtttgatgtcataagcacttttggacctaccatcttaatgttaaa 31165652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 27458347 - 27458307
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataa 65  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  27458347 aagaagaaaatgtgtataagtaatcatgtttgatgtcataa 27458307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 37126623 - 37126663
Alignment:
Q  28 aagaaaatgtgagtaagtaatcatgtttgatgtcataagct 68  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  37126623 aagaaaacgtgagtaagtaatcatgtttgatgtcttaagct 37126663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 48497056 - 48496985
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataagc--ttctgaacctaccacctcaatgttaaa 94  Q
    ||||| ||||| || |||||||||| | |||||| ||||||||  || ||||||||||||||||||||||||    
T  48497056 aagaataaaatttgtgtaagtaatcctatttgatatcataagcccttttgaacctaccacctcaatgttaaa 48496985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 14578548 - 14578491
Alignment:
Q  13 aaattcaaaaacaagaagaaaa---tgtgagtaagtaatcatgtttgatgtcataagc 67  Q
    ||||| ||||||||||||||||   ||||  |||||||||||||||||||||||||||    
T  14578548 aaattaaaaaacaagaagaaaaaaatgtgtataagtaatcatgtttgatgtcataagc 14578491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 26801318 - 26801272
Alignment:
Q  19 aaaaacaagaagaaaatgtgagtaagtaatcatgtttgatgtcataa 65  Q
    |||||||||||||| ||||| |||||||||||| |||||||| ||||    
T  26801318 aaaaacaagaagaatatgtgtgtaagtaatcatatttgatgttataa 26801272  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 11580696 - 11580625
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataag--cttctgaacctaccacctcaatgttaaa 94  Q
    |||||||| |||||  ||| |||||||||| |||||||||||  ||| ||||||||||| || |||||||||    
T  11580696 aagaagaagatgtgtataattaatcatgttggatgtcataagcacttttgaacctaccatcttaatgttaaa 11580625  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 31065174 - 31065232
Alignment:
Q  12 gaaattcaaaaacaagaagaaaa---tgtgagtaagtaatcatgtttgatgtcataagc 67  Q
    |||||||| ||||||||||||||   ||||  |||||||||||||||||| ||||||||    
T  31065174 gaaattcagaaacaagaagaaaaaaatgtgtataagtaatcatgtttgatatcataagc 31065232  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 33282749 - 33282684
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataagcttctgaacctaccacctcaatgt 90  Q
    |||||||||||||  |||||||||||||||||||||||||  |||  | |||||||||||||||||    
T  33282749 aagaagaaaatgtatgtaagtaatcatgtttgatgtcatatactttcggacctaccacctcaatgt 33282684  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 36260897 - 36260816
Alignment:
Q  14 aattcaaaaacaagaagaaaatgtgagtaagtaatcatgtttgatgtcataag--cttctgaacctaccacctcaatgttaaa 94  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||  |||||  ||  || |||||||| ||||||||||||    
T  36260897 aattcaaaaacaagatgaaaatgtgagtaa-taatcatgtttgatgaaataagtactattggacctaccaactcaatgttaaa 36260816  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 29306285 - 29306198
Alignment:
Q  12 gaaattcaaaaacaagaagaa---aatgtgagtaagtaatcatgtttgatgtcataag--cttctgaacctaccacctcaatgttaaa 94  Q
    |||||||||||||||||||||   ||||||  |||||||| |||||||||||||||||  ||| ||||||||||| || ||| |||||    
T  29306285 gaaattcaaaaacaagaagaagaaaatgtgtataagtaataatgtttgatgtcataagcacttttgaacctaccatcttaatattaaa 29306198  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 16194305 - 16194392
Alignment:
Q  12 gaaattcaaaaacaa---gaagaaaatgtgagtaagtaatcatgtttgatgtcataag--cttctgaacctaccacctcaatgttaaa 94  Q
    |||||||||||||||   ||||||||||||  | |||||||| |||||||||||||||  ||| || |||||||| || |||||||||    
T  16194305 gaaattcaaaaacaaaaagaagaaaatgtgtatgagtaatcacgtttgatgtcataagcacttttggacctaccatcttaatgttaaa 16194392  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 51490629 - 51490583
Alignment:
Q  15 attcaaaaacaagaagaaaatgtgagtaagtaatcatgtttgatgtc 61  Q
    ||||||||||||| ||||||||||| || ||||||||||||| ||||    
T  51490629 attcaaaaacaaggagaaaatgtgactaggtaatcatgtttggtgtc 51490583  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 43369859 - 43369819
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataa 65  Q
    |||||||| |||||  |||||||||||||||||||||||||    
T  43369859 aagaagaatatgtgtataagtaatcatgtttgatgtcataa 43369819  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 24194958 - 24194918
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataa 65  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  24194958 aagaagaaaatgtgtgtaagtaatcatgtttgatgtcataa 24194918  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 51906109 - 51906021
Alignment:
Q  13 aaattcaaaaac---aagaagaaaatgtgagtaagtaatcatgtttgatgtcataag--cttctgaacctaccacctcaatgttaaaat 96  Q
    ||||||||||||   |||||||||||||| |||||||||||||||  |||| |||||  |||||| |||||||  ||||||||||||||    
T  51906109 aaattcaaaaactagaagaagaaaatgtgtgtaagtaatcatgttatatgtaataagtacttctggacctaccgtctcaatgttaaaat 51906021  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 35292979 - 35292908
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataa--gcttctgaacctaccacctcaatgttaaa 94  Q
    |||||||||||||||||  ||||||||||||||||||| ||   ||| ||||| ||||||||||||| ||||    
T  35292979 aagaagaaaatgtgagtgcgtaatcatgtttgatgtcaaaaacacttttgaacttaccacctcaatgctaaa 35292908  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 867594 - 867537
Alignment:
Q  12 gaaattcaaaaacaagaaga---aaatgtgagtaagtaatcatgtttgatgtcataag 66  Q
    ||||||||||||||||||||   ||||||   ||||||||||||||||||||||||||    
T  867594 gaaattcaaaaacaagaagaggaaaatgtttataagtaatcatgtttgatgtcataag 867537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 23441618 - 23441568
Alignment:
Q  14 aattcaaaaacaa--gaagaaaatgtgagtaagtaatcatgtttgatgtca 62  Q
    |||||||||||||  ||||||||| || |||||||||||||||||||||||    
T  23441618 aattcaaaaacaaaggaagaaaatatgcgtaagtaatcatgtttgatgtca 23441568  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 56094348 - 56094435
Alignment:
Q  13 aaattcaaaaacaagaagaa----aatgtgagtaagtaatcatgtttgatgtcataa--gcttctgaacctaccacctcaatgttaaa 94  Q
    ||||||||||| ||||||||    ||||||  |||||||||||||||||||||||||   ||| ||||||||||| || |||||||||    
T  56094348 aaattcaaaaataagaagaagaaaaatgtgtataagtaatcatgtttgatgtcataaacacttttgaacctaccatcttaatgttaaa 56094435  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 2295060 - 2295096
Alignment:
Q  29 agaaaatgtgagtaagtaatcatgtttgatgtcataa 65  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  2295060 agaaaatgtgtgtaagtaatcatgtttgatgttataa 2295096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 13204875 - 13204804
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataa--gcttctgaacctaccacctcaatgttaaa 94  Q
    ||||||||||||   ||||||||| ||||||||||||||||   ||| ||||||||| || |||||||||||    
T  13204875 aagaagaaaatgcatgtaagtaattatgtttgatgtcataaacacttatgaacctactacttcaatgttaaa 13204804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 25857045 - 25856982
Alignment:
Q  33 aatgtgagtaagtaatcatgtttgatgtcataagc--ttctgaacctaccacctcaatgttaaa 94  Q
    |||||| |||| ||||||||||||||||||||| |  || || | |||||||||||||||||||    
T  25857045 aatgtgcgtaaataatcatgtttgatgtcataaacatttttggatctaccacctcaatgttaaa 25856982  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 33401598 - 33401543
Alignment:
Q  12 gaaattcaaaaacaagaagaaaatgtgagtaagtaatcatgtttgatgtcataagc 67  Q
    ||||||||||||||| ||||||||||    ||||||||||||||||||||||||||    
T  33401598 gaaattcaaaaacaaaaagaaaatgttttcaagtaatcatgtttgatgtcataagc 33401543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 994877 - 994942
Alignment:
Q  31 aaaatgtgagtaagtaatcatgtttgatgtcataa--gcttctgaacctaccacctcaatgttaaa 94  Q
    |||||||| ||  ||||||||||||||||||||||   ||| |||||||||||| |||||||||||    
T  994877 aaaatgtgtgttggtaatcatgtttgatgtcataaacacttttgaacctaccacatcaatgttaaa 994942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 23888238 - 23888291
Alignment:
Q  14 aattcaaaaacaagaagaaaatgtgagtaagtaatcatgtttgatgtcataagc 67  Q
    ||||| |||||||||||||||  || ||||||||||||||||| ||||||||||    
T  23888238 aattcgaaaacaagaagaaaacatgcgtaagtaatcatgtttggtgtcataagc 23888291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 18130573 - 18130626
Alignment:
Q  14 aattcaaaaacaagaagaaaatgtgagtaagtaatcatgtttgatgtcataagc 67  Q
    ||||| |||||||||||||||  ||  |||||||||||||||| ||||||||||    
T  18130573 aattcgaaaacaagaagaaaacatgcataagtaatcatgtttggtgtcataagc 18130626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 2391454 - 2391396
Alignment:
Q  12 gaaattcaaaaacaagaa---gaaaatgtgagtaagtaatcatgtttgatgtcataagc 67  Q
    ||||||||||||||| ||   |||||||||  ||||||||||| |||||||||||||||    
T  2391454 gaaattcaaaaacaaaaacaagaaaatgtgtataagtaatcatatttgatgtcataagc 2391396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 33407248 - 33407196
Alignment:
Q  14 aattcaaaaacaagaagaa-aatgtgagtaagtaatcatgtttgatgtcataa 65  Q
    ||||||||||||||||||| ||  ||  |||||||||||||||||||||||||    
T  33407248 aattcaaaaacaagaagaagaaaatgtctaagtaatcatgtttgatgtcataa 33407196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 34595999 - 34595959
Alignment:
Q  25 aagaagaaaatgtgagtaagtaatcatgtttgatgtcataa 65  Q
    ||||||||||||||  ||||||||||| |||||||||||||    
T  34595999 aagaagaaaatgtgtataagtaatcatatttgatgtcataa 34595959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 38582301 - 38582355
Alignment:
Q  14 aattcaaaaacaagaa---gaaaatgtgagtaagtaatcatgtttgatgtcataa 65  Q
    ||||||||||||||||   |||||||||  |||||||||||||| ||||||||||    
T  38582301 aattcaaaaacaagaaaaagaaaatgtgtctaagtaatcatgttagatgtcataa 38582355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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