View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0245-INSERTION-16 (Length: 379)
Name: NF0245-INSERTION-16
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0245-INSERTION-16 |
 | |
|
| [»] chr6 (15 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 122 - 379
Target Start/End: Complemental strand, 2673376 - 2673119
Alignment:
| Q |
122 |
aattctttattttaacaattttcttcaaattaattacacaggtaagatctttggtgggtgatagattggctctagtggtacagacaatttcagcagtggt |
221 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2673376 |
aattattttttttaacaattttcttcaaattaattacacaggtaagatctttggtgggtgatagattggctctagtggtacaaacaatttcagcagtggt |
2673277 |
T |
|
| Q |
222 |
aatagcattcacaatgggactaatcattgcatggagactagccattgttatgatagcagttcaaccagttatcatatgttgtttctatacaagacgtgtc |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2673276 |
aatagcattcacaatgggactaatcattgcatggagactcgccattgttatgatagcagttcaaccagttatcatatgttgtttctatacaagacgtgtc |
2673177 |
T |
|
| Q |
322 |
cttcttaagaacatgtcaagcaaagccatcaaggcccaagatgaatgtagcaaaatag |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2673176 |
cttcttaagaacatgtcaagcaaagccatcaaggcccaagatgaatgtagcaaaatag |
2673119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 155 - 379
Target Start/End: Original strand, 2591300 - 2591526
Alignment:
| Q |
155 |
ttacacaggtaagatctttggtgggtgatagattggctctagtggtacagacaatttcagcagtggtaatagcattcacaatgggactaat--cattgca |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2591300 |
ttacacaggtaagatctttggtgggtgatagattggctctagtggtacaaacaatttcagcagtggtaatagcattcacaatgggactaatatcattgca |
2591399 |
T |
|
| Q |
253 |
tggagactagccattgttatgatagcagttcaaccagttatcatatgttgtttctatacaagacgtgtccttcttaagaacatgtcaagcaaagccatca |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||| |
|
|
| T |
2591400 |
tggagactagccattgttatgatagcagttcaaccagttatcatatgttgtttctatacaaggtgtgtccttcttaggaacatgtcaagaaaagccatca |
2591499 |
T |
|
| Q |
353 |
aggcccaagatgaatgtagcaaaatag |
379 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2591500 |
aggcccaagatgaatgtagcaaaatag |
2591526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 145 - 379
Target Start/End: Complemental strand, 2642193 - 2641959
Alignment:
| Q |
145 |
ttcaaattaattacacaggtaagatctttggtgggtgatagattggctctagtggtacagacaatttcagcagtggtaatagcattcacaatgggactaa |
244 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||| ||| |
|
|
| T |
2642193 |
ttcaaattaataacacaggtaagatctttggtgagtgatagattggcgctagtggtacaaacaatatcagcagtggtaatatcattcacaatgggtttaa |
2642094 |
T |
|
| Q |
245 |
tcattgcatggagactagccattgttatgatagcagttcaaccagttatcatatgttgtttctatacaagacgtgtccttcttaagaacatgtcaagcaa |
344 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
2642093 |
tcatcgcatggagactagccattgttatgatagcagttcaaccccttatcatatgttgtttctacacaaggcgtgtccttctcaagaatatgtcaagcaa |
2641994 |
T |
|
| Q |
345 |
agccatcaaggcccaagatgaatgtagcaaaatag |
379 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2641993 |
agccatcaaggcccaagatgaatgtagtaaaatag |
2641959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 150 - 379
Target Start/End: Complemental strand, 2569973 - 2569744
Alignment:
| Q |
150 |
attaattacacaggtaagatctttggtgggtgatagattggctctagtggtacagacaatttcagcagtggtaatagcattcacaatgggactaatcatt |
249 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
2569973 |
attaatttcacaggtaagatctttggtgggtgatagattggcattagtagtacaaacaatttcagcggtggtaatagcattcacaatgggcctaatcatt |
2569874 |
T |
|
| Q |
250 |
gcatggagactagccattgttatgatagcagttcaaccagttatcatatgttgtttctatacaagacgtgtccttcttaagaacatgtcaagcaaagcca |
349 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2569873 |
gcatggaaactagccattgttatgatagcagttcaaccacttatcatttattgtttctacacaaggcgtgtccttcttaagaacatgtcaagcaaagcca |
2569774 |
T |
|
| Q |
350 |
tcaaggcccaagatgaatgtagcaaaatag |
379 |
Q |
| |
|
||||||| |||||| | ||||||||||||| |
|
|
| T |
2569773 |
tcaaggctcaagatcagtgtagcaaaatag |
2569744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 155 - 379
Target Start/End: Original strand, 2622846 - 2623070
Alignment:
| Q |
155 |
ttacacaggtaagatctttggtgggtgatagattggctctagtggtacagacaatttcagcagtggtaatagcattcacaatgggactaatcattgcatg |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
2622846 |
ttacacaggtaagatctttggtgggtgatagattgtctctagtgatacaaacaatttcagcagtggtaatagcattcacaatgggactacttattgcatg |
2622945 |
T |
|
| Q |
255 |
gagactagccattgttatgatagcagttcaaccagttatcatatgttgtttctatacaagacgtgtccttcttaagaacatgtcaagcaaagccatcaag |
354 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||| ||||||| ||||||| ||||| |
|
|
| T |
2622946 |
gagattagccattgttatgatagcagttcaaccaattatcatatattgtttctacacaaggtttgtccttcttaagaatatgtcaaacaaagccgtcaag |
2623045 |
T |
|
| Q |
355 |
gcccaagatgaatgtagcaaaatag |
379 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2623046 |
gcccaagatgaatgtagcaaaatag |
2623070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 149 - 379
Target Start/End: Complemental strand, 2597530 - 2597300
Alignment:
| Q |
149 |
aattaattacacaggtaagatctttggtgggtgatagattggctctagtggtacagacaatttcagcagtggtaatagcattcacaatgggactaatcat |
248 |
Q |
| |
|
||||||| ||| | ||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
2597530 |
aattaatgacatacgtaagatctttggtgggtgatcgattggcattagcagtacaaacaatttcagcagtgataatagcattcacaatgggcctaatcat |
2597431 |
T |
|
| Q |
249 |
tgcatggagactagccattgttatgatagcagttcaaccagttatcatatgttgtttctatacaagacgtgtccttcttaagaacatgtcaagcaaagcc |
348 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
2597430 |
tgcatggagactaaccattgttatgatagtagtgcaaccagttattatatgttgtttctatacaaggcgtgtccttcttaagaacatgttaagcaaagcc |
2597331 |
T |
|
| Q |
349 |
atcaaggcccaagatgaatgtagcaaaatag |
379 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| |
|
|
| T |
2597330 |
atcaaggctcaagatgagtgtagcaaaatag |
2597300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 145 - 379
Target Start/End: Original strand, 2439343 - 2439577
Alignment:
| Q |
145 |
ttcaaattaattacacaggtaagatctttggtgggtgatagattggctctagtggtacagacaatttcagcagtggtaatagcattcacaatgggactaa |
244 |
Q |
| |
|
||||||||||| | ||||||||||||| ||||||||||||| ||| | ||||||||||| || || |||||| ||||| || ||| |||||||| |||| |
|
|
| T |
2439343 |
ttcaaattaataatacaggtaagatctgtggtgggtgatagtttgtcactagtggtacaaactatatcagcaatggtagtaacatgtacaatgggtctaa |
2439442 |
T |
|
| Q |
245 |
tcattgcatggagactagccattgttatgatagcagttcaaccagttatcatatgttgtttctatacaagacgtgtccttcttaagaacatgtcaagcaa |
344 |
Q |
| |
|
| ||| ||||||||||| |||||||||||||| ||||||||||| ||| ||| | ||||| ||| ||||||||||| |||||||| ||||||||||| || |
|
|
| T |
2439443 |
ttattacatggagactatccattgttatgatatcagttcaaccaattaccattttttgttactacacaagacgtgttcttcttaataacatgtcaagtaa |
2439542 |
T |
|
| Q |
345 |
agccatcaaggcccaagatgaatgtagcaaaatag |
379 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||| |
|
|
| T |
2439543 |
agccattaaggctcaagatgacagtagcaaaatag |
2439577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 170 - 379
Target Start/End: Original strand, 2450093 - 2450302
Alignment:
| Q |
170 |
ctttggtgggtgatagattggctctagtggtacagacaatttcagcagtggtaatagcattcacaatgggactaatcattgcatggagactagccattgt |
269 |
Q |
| |
|
|||||||||||||||| || | ||||||||| || || ||||||||||||| | |||||| |||||||||||||||| ||||||||||| | ||||| |
|
|
| T |
2450093 |
ctttggtgggtgatagtttaggaacagtggtacaaaccatatcagcagtggtaacaacattcataatgggactaatcattacatggagactatcaattgt |
2450192 |
T |
|
| Q |
270 |
tatgatagcagttcaaccagttatcatatgttgtttctatacaagacgtgtccttcttaagaacatgtcaagcaaagccatcaaggcccaagatgaatgt |
369 |
Q |
| |
|
||||||||||||||||||| || ||| ||||||||| ||||| || ||||||||||| |||||||| ||||| || | ||||||||| || || |
|
|
| T |
2450193 |
tatgatagcagttcaaccaattcacatggtttgtttctacacaaggagttcccttcttaagagaatgtcaagaaaagcaattgaagcccaagataaaagt |
2450292 |
T |
|
| Q |
370 |
agcaaaatag |
379 |
Q |
| |
|
|||||||||| |
|
|
| T |
2450293 |
agcaaaatag |
2450302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 2673122 - 2673059
Alignment:
| Q |
9 |
atagctgctgaagcagtttcaaatctaagaaccatctatgctttttcatctcaagatagaattc |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2673122 |
atagctgctgaagcagtttcaaatctaagaaccatcaatgctttttcatctcaagatagaattc |
2673059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 2569747 - 2569684
Alignment:
| Q |
9 |
atagctgctgaagcagtttcaaatctaagaaccatctatgctttttcatctcaagatagaattc |
72 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2569747 |
atagctgctgaagctgtttcaaatctaagaaccatcaatgctttttcatctcaagatagaattc |
2569684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 2591523 - 2591586
Alignment:
| Q |
9 |
atagctgctgaagcagtttcaaatctaagaaccatctatgctttttcatctcaagatagaattc |
72 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2591523 |
atagctgctgaagctgtttcaaatctaagaaccatcaatgctttttcatctcaagatagaattc |
2591586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 2597303 - 2597240
Alignment:
| Q |
9 |
atagctgctgaagcagtttcaaatctaagaaccatctatgctttttcatctcaagatagaattc |
72 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2597303 |
atagctgctgaagctgtttcaaatctaagaaccatcaatgctttttcatctcaagatagaattc |
2597240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 2623067 - 2623122
Alignment:
| Q |
9 |
atagctgctgaagcagtttcaaatctaagaaccatctatgctttttcatctcaaga |
64 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2623067 |
atagctgctgaagctgtttcaaatctaagaaccatcaatgctttttcatctcaaga |
2623122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 2641962 - 2641901
Alignment:
| Q |
9 |
atagctgctgaagcagtttcaaatctaagaaccatctatgctttttcatctcaagatagaat |
70 |
Q |
| |
|
|||||| ||||||| ||| ||||||| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
2641962 |
atagcttctgaagctgttacaaatcttagaaccatcaatagtttttcatctcaagatagaat |
2641901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 2439574 - 2439635
Alignment:
| Q |
9 |
atagctgctgaagcagtttcaaatctaagaaccatctatgctttttcatctcaagatagaat |
70 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| |||||||||| ||| ||||||| |
|
|
| T |
2439574 |
atagctgctgaagctgtttcaaatctaagaatcatcacatctttttcatcacaaaatagaat |
2439635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 145 - 379
Target Start/End: Original strand, 53393345 - 53393582
Alignment:
| Q |
145 |
ttcaaattaattacacaggtaagatctttggtgggtgatagattggctctagtggtacagacaatttcagcagtggtaatagcattcacaatgggactaa |
244 |
Q |
| |
|
||||||||||| |||| | ||||||||||||| ||||||||||||| ||||| ||| | ||||| || |||||||||||| ||||||||||||| ||| |
|
|
| T |
53393345 |
ttcaaattaataacacggttaagatctttggttagtgatagattggcgctagttgtaaaaacaatatcggcagtggtaatatcattcacaatgggtttaa |
53393444 |
T |
|
| Q |
245 |
tcattgcatggagactagccattgttatgatagcagttcaaccagttatcatatgttgtttctatacaagacgtgtccttcttaagaacatgtcaagcaa |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
53393445 |
tcattgcatggagactagccattgttatgatagcagtaaaaccacttatcatctgtagtttctatacaagacgcatccttctcaagaatatgtcaagcaa |
53393544 |
T |
|
| Q |
345 |
a---gccatcaaggcccaagatgaatgtagcaaaatag |
379 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
53393545 |
aggcgccatcaaggcccaagatgaatgtagtaaaatag |
53393582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 17871163 - 17871100
Alignment:
| Q |
7 |
agatagctgctgaagcagtttcaaatctaagaaccatctatgctttttcatctcaagatagaat |
70 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||| ||||||||| |||||||||||||| |
|
|
| T |
17871163 |
agatagctgctgaagctgtttcaaatcatagaaccataactgctttttcttctcaagatagaat |
17871100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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