View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0245-INSERTION-20 (Length: 358)
Name: NF0245-INSERTION-20
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0245-INSERTION-20 |
 | |
|
| [»] chr1 (7 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 156 - 358
Target Start/End: Complemental strand, 33415845 - 33415643
Alignment:
| Q |
156 |
ttaatttaacatacaatcattgtccaaaaactcattataattattgtaccaatagtaagacatcgatttcaatcataataggaggacatctaaaatgtcc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33415845 |
ttaatttaacatacaatcattgtccaaaaactcattataattattgtaccaatagtaaggcattgatttcaatcttaataggaggacatctaaaatgtcc |
33415746 |
T |
|
| Q |
256 |
acagattgcatttaaggttgataatttaattgaaacctcatcctacctatgtctgtatcctcttgcatggaattggtgggagtaattttaaatacaccct |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33415745 |
acagattgcatttaaggttgataatttaattgaaacctcatcctacccatgtctgtatcctcttgcatggcattggtgggagtaattttaaatacaccct |
33415646 |
T |
|
| Q |
356 |
atg |
358 |
Q |
| |
|
||| |
|
|
| T |
33415645 |
atg |
33415643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 33416033 - 33415879
Alignment:
| Q |
6 |
caattgggttgggaccatttggatgacacctattttaggtgcttatgttgctgatgctcaccttggtcgtttttggactttcctcattgcatccttcatt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33416033 |
caattgggttgggaccatttggatgacacctattttaggtgcttatgttgctgatgctcaccttggtcgtttttggactttcctcattgcatccttcatt |
33415934 |
T |
|
| Q |
106 |
tatctctcggtaagcaatagtataagctataatttccttataagcaagtcttaat |
160 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
33415933 |
tatctctcggtaagcaatagtatatgctataactttcttataagcaagtcttaat |
33415879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 15778439 - 15778493
Alignment:
| Q |
41 |
taggtgcttatgttgctgatgctcaccttggtcgtttttggactttcctcattgc |
95 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | ||||||||| ||||||| |
|
|
| T |
15778439 |
taggtgcttatgttgctgattctcaccttggtcgctattggacttttgtcattgc |
15778493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 15735492 - 15735572
Alignment:
| Q |
6 |
caattgggttgggaccatttggatgacacctattttaggtgcttatgttgctgatgctcaccttggtcgtttttggacttt |
86 |
Q |
| |
|
|||||||| ||| ||||| ||||| || || || ||||||||||||||||||||| | ||||||| |||| ||||||||| |
|
|
| T |
15735492 |
caattgggctggcaccatgtggatcactccaatattaggtgcttatgttgctgatacctaccttggccgttattggacttt |
15735572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 15753521 - 15753604
Alignment:
| Q |
3 |
caacaattgggttgggaccatttggatgacacctattttaggtgcttatgttgctgatgctcaccttggtcgtttttggacttt |
86 |
Q |
| |
|
||||||||||||||| || ||| ||||| || || ||||||||||| ||||||||||||| |||||||| | ||||||||| |
|
|
| T |
15753521 |
caacaattgggttggcactgtttttatgactccaatattaggtgcttacattgctgatgctcatcttggtcgctattggacttt |
15753604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 15727916 - 15727969
Alignment:
| Q |
6 |
caattgggttgggaccatttggatgacacctattttaggtgcttatgttgctga |
59 |
Q |
| |
|
|||||||||||| ||||||||||| || || || || ||||||||||||||||| |
|
|
| T |
15727916 |
caattgggttggtaccatttggatcactccaatattgggtgcttatgttgctga |
15727969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 15764658 - 15764738
Alignment:
| Q |
6 |
caattgggttgggaccatttggatgacacctattttaggtgcttatgttgctgatgctcaccttggtcgtttttggacttt |
86 |
Q |
| |
|
||||||| |||| ||||||| ||||| || || ||||||||||| ||||||||||||| ||||| || | ||||||||| |
|
|
| T |
15764658 |
caattggattggcaccatttttatgactccaatattaggtgcttacattgctgatgctcatcttggccgctattggacttt |
15764738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2327 times since January 2019
Visitors: 2400