View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0245-INSERTION-21 (Length: 215)
Name: NF0245-INSERTION-21
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0245-INSERTION-21 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 28384729 - 28384562
Alignment:
| Q |
8 |
ttatcatccaaaaaccaacaggttcatcagaatcaaaattaatccaaccatgaatagtgttatctgtgttctcacatgagtactgatatttatcatccac |
107 |
Q |
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| T |
28384729 |
ttatcatccaaaaaccaacaggttcatcagaatcaaaattaatccaaccatgaacagtgttatctgtgttctcacatgagtactgatatttatcatccac |
28384630 |
T |
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| Q |
108 |
ctgaacccaacaaaattatttcattttcattcacgtgcatcttttagccaaaagtaaattccatatgc |
175 |
Q |
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| T |
28384629 |
ctgaacccaacaaaattatttcattttcattcacgtgcatcttttagccaaaattaaattccatatgc |
28384562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 28411018 - 28411146
Alignment:
| Q |
33 |
atcagaatcaaaattaatccaaccatgaatagtgttatctgtgttctcacatgagtactgatatttatcatccacctgaacccaacaaaattatttcatt |
132 |
Q |
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||||||||||| | ||||||| ||||||| ||||||| | |||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||| |
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| T |
28411018 |
atcagaatcaagactaatccatccatgaactgtgttatttatgttctcacatgagtattgatatttatcatccacctgagtacgacaaaatcatttcata |
28411117 |
T |
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| Q |
133 |
ttcattcacgtgcatcttttagccaaaag |
161 |
Q |
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| T |
28411118 |
ttcattcacctgcatcttttaaccaaaag |
28411146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 28392035 - 28391901
Alignment:
| Q |
8 |
ttatcatccaaaaaccaacaggttcatcagaatcaaaattaatccaaccatgaatagtgttatctgtgttctcacatgagtactgatatttatcatccac |
107 |
Q |
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|||||||||| ||||| || ||| ||||||||||||| |||||| ||||||| |||| |||| |||||||||| ||||| ||||||||||||||||| |
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| T |
28392035 |
ttatcatccagaaacccactggtggatcagaatcaaaaccaatccatccatgaactgtgt-atctttgttctcacaagagtattgatatttatcatccac |
28391937 |
T |
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| Q |
108 |
ctgaacccaacaaaattatttcattttcattcacgt |
143 |
Q |
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||||||| |||||| || |||| ||||||||||| |
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| T |
28391936 |
ctgaaccagtcaaaatcatatcatattcattcacgt |
28391901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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