View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0245-INSERTION-22 (Length: 364)

Name: NF0245-INSERTION-22
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0245-INSERTION-22
NF0245-INSERTION-22
[»] chr6 (20 HSPs)
chr6 (9-142)||(26950305-26950438)
chr6 (11-142)||(26636208-26636339)
chr6 (11-142)||(26742174-26742305)
chr6 (11-142)||(26975513-26975644)
chr6 (9-142)||(26959688-26959821)
chr6 (9-142)||(27664692-27664825)
chr6 (23-142)||(31288867-31288986)
chr6 (256-361)||(27664585-27664690)
chr6 (9-142)||(25074432-25074565)
chr6 (264-357)||(26975652-26975745)
chr6 (9-137)||(26849279-26849407)
chr6 (258-361)||(26849409-26849512)
chr6 (256-339)||(26959845-26959928)
chr6 (264-361)||(26636343-26636440)
chr6 (264-361)||(26742309-26742406)
chr6 (266-339)||(26950462-26950535)
chr6 (264-361)||(25074567-25074661)
chr6 (263-342)||(31288984-31289063)
chr6 (96-142)||(24716147-24716193)
chr6 (257-321)||(28901336-28901400)
[»] chr2 (2 HSPs)
chr2 (9-142)||(17992702-17992835)
chr2 (264-361)||(17992603-17992700)
[»] scaffold0007 (3 HSPs)
scaffold0007 (257-321)||(31697-31761)
scaffold0007 (257-321)||(36446-36510)
scaffold0007 (257-306)||(67059-67108)
[»] scaffold0573 (1 HSPs)
scaffold0573 (257-321)||(8394-8458)


Alignment Details
Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 26950438 - 26950305
Alignment:
Q  9 aattcacttctgatattcgagatttgagtccaacaaggtactcaggaacatgtacaggaacatggttgatcttgtaggagatgtctgtaactattttttc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||||||    
T  26950438 aattcacttctgatattcgagatttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttc 26950339  T
Q  109 aataaaatcgcattcatattcctttctgtccaat 142  Q
    ||||||||||| ||||||||| ||||||||||||    
T  26950338 aataaaatcgcgttcatattcatttctgtccaat 26950305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 26636339 - 26636208
Alignment:
Q  11 ttcacttctgatattcgagatttgagtccaacaaggtactcaggaacatgtacaggaacatggttgatcttgtaggagatgtctgtaactattttttcaa 110  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  26636339 ttcacttctgatattcgagatttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaa 26636240  T
Q  111 taaaatcgcattcatattcctttctgtccaat 142  Q
    ||||||| | ||||||||| ||||||||||||    
T  26636239 taaaatcacgttcatattcatttctgtccaat 26636208  T

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Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 26742305 - 26742174
Alignment:
Q  11 ttcacttctgatattcgagatttgagtccaacaaggtactcaggaacatgtacaggaacatggttgatcttgtaggagatgtctgtaactattttttcaa 110  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  26742305 ttcacttctgatattcgagatttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaa 26742206  T
Q  111 taaaatcgcattcatattcctttctgtccaat 142  Q
    ||||||| | ||||||||| ||||||||||||    
T  26742205 taaaatcacgttcatattcatttctgtccaat 26742174  T

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Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 26975644 - 26975513
Alignment:
Q  11 ttcacttctgatattcgagatttgagtccaacaaggtactcaggaacatgtacaggaacatggttgatcttgtaggagatgtctgtaactattttttcaa 110  Q
    ||||||| | |||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  26975644 ttcacttttaatattcgagatttgagtccaacaaggtaatcagcaacatgtaaaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaa 26975545  T
Q  111 taaaatcgcattcatattcctttctgtccaat 142  Q
    ||||||| | ||||||||| ||||||||||||    
T  26975544 taaaatcacgttcatattcatttctgtccaat 26975513  T

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Target: chr6; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 26959821 - 26959688
Alignment:
Q  9 aattcacttctgatattcgagatttgagtccaacaaggtactcaggaacatgtacaggaacatggttgatcttgtaggagatgtctgtaactattttttc 108  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||| |||||||| |||||||||||| ||||||| ||||| ||||||||||||||||||    
T  26959821 aattcacttttgatattcgagatttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacgtctgtaactattttttc 26959722  T
Q  109 aataaaatcgcattcatattcctttctgtccaat 142  Q
    ||||||||| | |||||| || ||||||||||||    
T  26959721 aataaaatcacgttcatactcatttctgtccaat 26959688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 27664692 - 27664825
Alignment:
Q  9 aattcacttctgatattcgagatttgagtccaacaaggtactcaggaacatgtacaggaacatggttgatcttgtaggagatgtctgtaactattttttc 108  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||  | |||||||||||| ||||| |||||||||||||| |||    
T  27664692 aattcacttctgatattcgagattcgagtccaacaaggtactcagcaacatgtaaatgacaacggttgatcttgttggagacgtctgtaactatttcttc 27664791  T
Q  109 aataaaatcgcattcatattcctttctgtccaat 142  Q
    |||||| | | |||||||||  ||||||||||||    
T  27664792 aataaatttgtattcatatttatttctgtccaat 27664825  T

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Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 31288986 - 31288867
Alignment:
Q  23 attcgagatttgagtccaacaaggtactcaggaacatgtacaggaacatggttgatcttgtaggagatgtctgtaactattttttcaataaaatcgcatt 122  Q
    |||||||||||||| ||||||||||| |||| |||||||| |||||||||||| ||||||| |||||  |||||||||||||||||||||||||| | ||    
T  31288986 attcgagatttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacatctgtaactattttttcaataaaatctcgtt 31288887  T
Q  123 catattcctttctgtccaat 142  Q
    ||||||| ||| ||||||||    
T  31288886 catattcatttatgtccaat 31288867  T

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Target: chr6; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 256 - 361
Target Start/End: Original strand, 27664585 - 27664690
Alignment:
Q  256 aacaattgaattataaacggcttgagcaagtgttgtcttacccattccaccagttccgaggattcctattatgcagactccatcattacatcccaagtct 355  Q
    |||||||||||||||||| |||| ||||||||||||||||||||  || |||||||| ||||||||||||||| ||||||||||  ||||||||||||||    
T  27664585 aacaattgaattataaactgcttcagcaagtgttgtcttacccagacctccagttccaaggattcctattatgtagactccatcggtacatcccaagtct 27664684  T
Q  356 agaagt 361  Q
    ||||||    
T  27664685 agaagt 27664690  T

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Target: chr6; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 25074565 - 25074432
Alignment:
Q  9 aattcacttctgatattcgagatttgagtccaacaaggtactcaggaacatgtacaggaacatggttgatcttgtaggagatgtctgtaactattttttc 108  Q
    ||||||||||||| |||||||||   || ||||||||||| |||| |||||||| |||||  ||||| ||||||| ||||| |||| |||||||||||||    
T  25074565 aattcacttctgaaattcgagatcgaagaccaacaaggtaatcagtaacatgtaaaggaatttggttaatcttgttggagacgtctctaactattttttc 25074466  T
Q  109 aataaaatcgcattcatattcctttctgtccaat 142  Q
    ||||||||| | ||||||||| ||||||||||||    
T  25074465 aataaaatcacgttcatattcatttctgtccaat 25074432  T

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Target: chr6; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 264 - 357
Target Start/End: Complemental strand, 26975745 - 26975652
Alignment:
Q  264 aattataaacggcttgagcaagtgttgtcttacccattccaccagttccgaggattcctattatgcagactccatcattacatcccaagtctag 357  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| || | |||||||||||    
T  26975745 aattataaactgcttgagcaagtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctag 26975652  T

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Target: chr6; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 26849407 - 26849279
Alignment:
Q  9 aattcacttctgatattcgagatttgagtccaacaaggtactcaggaacatgtacaggaacatggttgatcttgtaggagatgtctgtaactattttttc 108  Q
    ||||||||||||||||||||||||| |||||||||||||| |||| |||||| | |||||||||||||||||||| |||||  ||  ||||||||||  |    
T  26849407 aattcacttctgatattcgagatttaagtccaacaaggtaatcagcaacatgcaaaggaacatggttgatcttgttggagacatccttaactattttccc 26849308  T
Q  109 aataaaatcgcattcatattcctttctgt 137  Q
    |||||||| |  ||||||||| |||||||    
T  26849307 aataaaatggtgttcatattcatttctgt 26849279  T

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Target: chr6; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 361
Target Start/End: Complemental strand, 26849512 - 26849409
Alignment:
Q  258 caattgaattataaacggcttgagcaagtgttgtcttacccattccaccagttccgaggattcctattatgcagactccatcattacatcccaagtctag 357  Q
    |||| ||||||||||| ||||||||||||||||| || |||||||| |||||||| |||||||||||| | ||||||||||||||| || |||| |||||    
T  26849512 caatcgaattataaactgcttgagcaagtgttgtttttcccattcctccagttccaaggattcctattttccagactccatcattagattccaattctag 26849413  T
Q  358 aagt 361  Q
    ||||    
T  26849412 aagt 26849409  T

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Target: chr6; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 26959928 - 26959845
Alignment:
Q  256 aacaattgaattataaacggcttgagcaagtgttgtcttacccattccaccagttccgaggattcctattatgcagactccatc 339  Q
    |||||| ||||||||||| ||||||| |||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||    
T  26959928 aacaatcgaattataaactgcttgagaaagtgttgtctttcccattcctccagttccaaggattcctatcatgcagactccatc 26959845  T

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Target: chr6; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 264 - 361
Target Start/End: Complemental strand, 26636440 - 26636343
Alignment:
Q  264 aattataaacggcttgagcaagtgttgtcttacccattccaccagttccgaggattcctattatgcagactccatcattacatcccaagtctagaagt 361  Q
    |||||||||  |||||||||||| ||||||| ||||||||  | ||||| ||||||||||||||||||||||||||| || | |||||||||||||||    
T  26636440 aattataaattgcttgagcaagttttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagt 26636343  T

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Target: chr6; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 264 - 361
Target Start/End: Complemental strand, 26742406 - 26742309
Alignment:
Q  264 aattataaacggcttgagcaagtgttgtcttacccattccaccagttccgaggattcctattatgcagactccatcattacatcccaagtctagaagt 361  Q
    |||||||||  |||||||||||| ||||||| ||||||||  | ||||| ||||||||||||||||||||||||||| || | |||||||||||||||    
T  26742406 aattataaattgcttgagcaagttttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagt 26742309  T

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Target: chr6; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 26950535 - 26950462
Alignment:
Q  266 ttataaacggcttgagcaagtgttgtcttacccattccaccagttccgaggattcctattatgcagactccatc 339  Q
    |||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||    
T  26950535 ttataaactgcttgagcaagtgttgtctttcccattcccccagttccaaggattcctatcatgcagactccatc 26950462  T

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Target: chr6; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 264 - 361
Target Start/End: Complemental strand, 25074661 - 25074567
Alignment:
Q  264 aattataaacggcttgagcaagtgttgtcttacccattccaccagttccgaggattcctattatgcagactccatcattacatcccaagtctagaagt 361  Q
    |||||||||  ||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||| ||||   ||||| |||||||||||||||||    
T  25074661 aattataaattgcttgagcaagagttgtcttgcccattccaccagttccaacgattcctattatgcatactc---cattatatcccaagtctagaagt 25074567  T

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Target: chr6; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 263 - 342
Target Start/End: Complemental strand, 31289063 - 31288984
Alignment:
Q  263 gaattataaacggcttgagcaagtgttgtcttacccattccaccagttccgaggattcctattatgcagactccatcatt 342  Q
    ||||||||||  ||||||| ||||||||| |||||| |||| |||||||| || ||||||||||||||||||||||||||    
T  31289063 gaattataaattgcttgagaaagtgttgttttaccccttcctccagttccaagtattcctattatgcagactccatcatt 31288984  T

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Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 24716193 - 24716147
Alignment:
Q  96 taactattttttcaataaaatcgcattcatattcctttctgtccaat 142  Q
    |||||||||||||||||| ||||| ||||| ||| ||||||||||||    
T  24716193 taactattttttcaataacatcgccttcatgttcatttctgtccaat 24716147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 28901400 - 28901336
Alignment:
Q  257 acaattgaattataaacggcttgagcaagtgttgtcttacccattccaccagttccgaggattcc 321  Q
    ||||||||||||||||| ||  ||| ||| ||||| || || ||||||||||||||| |||||||    
T  28901400 acaattgaattataaactgcaagagaaagagttgttttccctattccaccagttccgtggattcc 28901336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 17992702 - 17992835
Alignment:
Q  9 aattcacttctgatattcgagatttgagtccaacaaggtactcaggaacatgtacaggaacatggttgatcttgtaggagatgtctgtaactattttttc 108  Q
    |||||||||||||||||||||||||||| |||| |||||| || | ||||||||  ||||| ||||| ||||||| |||  |||||||||||||||||||    
T  17992702 aattcacttctgatattcgagatttgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtctgtaactattttttc 17992801  T
Q  109 aataaaatcgcattcatattcctttctgtccaat 142  Q
    ||||||||| | ||||||||| ||||||||||||    
T  17992802 aataaaatcacgttcatattcatttctgtccaat 17992835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 264 - 361
Target Start/End: Original strand, 17992603 - 17992700
Alignment:
Q  264 aattataaacggcttgagcaagtgttgtcttacccattccaccagttccgaggattcctattatgcagactccatcattacatcccaagtctagaagt 361  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||| || |||||||||||||||||||| ||||||||| || ||||||||||||||    
T  17992603 aattataaactgcttgagcaagagttgtcttgcccattccaccagtaccaaggattcctattatgcagacaccatcattatattccaagtctagaagt 17992700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 31761 - 31697
Alignment:
Q  257 acaattgaattataaacggcttgagcaagtgttgtcttacccattccaccagttccgaggattcc 321  Q
    ||||||||||||||||| ||||||||||| ||||| || || |||||||| |||||| |||||||    
T  31761 acaattgaattataaaccgcttgagcaagagttgttttccctattccaccggttccgtggattcc 31697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 36510 - 36446
Alignment:
Q  257 acaattgaattataaacggcttgagcaagtgttgtcttacccattccaccagttccgaggattcc 321  Q
    ||||||||||||||||| ||||||||||| ||||| || || |||||||| |||||| |||||||    
T  36510 acaattgaattataaaccgcttgagcaagagttgttttccctattccaccggttccgtggattcc 36446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 67108 - 67059
Alignment:
Q  257 acaattgaattataaacggcttgagcaagtgttgtcttacccattccacc 306  Q
    ||||||||||||||||| ||||||||||| ||||| || || ||||||||    
T  67108 acaattgaattataaaccgcttgagcaagagttgttttccctattccacc 67059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 8394 - 8458
Alignment:
Q  257 acaattgaattataaacggcttgagcaagtgttgtcttacccattccaccagttccgaggattcc 321  Q
    ||||||||||||||||| ||  ||| ||| ||||| || || ||||||||||||||| |||||||    
T  8394 acaattgaattataaactgcaagagaaagagttgttttccctattccaccagttccgtggattcc 8458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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