View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0245-INSERTION-3 (Length: 596)
Name: NF0245-INSERTION-3
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0245-INSERTION-3 |
 | |
|
| [»] scaffold0078 (4 HSPs) |
| |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] scaffold0184 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0078 (Bit Score: 459; Significance: 0; HSPs: 4)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 8 - 596
Target Start/End: Complemental strand, 3044 - 2465
Alignment:
| Q |
8 |
aacttgaggtgcccatgatggcaacataaaacctttttctttggttctttccaaaaaccctttaggtaaaaatttcagtggatcttcatttgcatcttca |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3044 |
aacttgaggtgcccatgatggcaaaataaaacctttttctttggttctttccaaaaaccctttaggtaaaaatttcagtggatcttcatttgcatcttca |
2945 |
T |
|
| Q |
108 |
agataaacagcactaactgaatcacttggttgtctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtcttt |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2944 |
agataagcagcactaactgaatcacttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattcatctgtcttt |
2845 |
T |
|
| Q |
208 |
gagaaagtgttccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaagcattcatgttcatcgccaacaacatc |
307 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
2844 |
gtgaaagtgttccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcaccaacaacatc |
2745 |
T |
|
| Q |
308 |
attgttacttgaccctatttgtgtaatgggtccgacggggaaaagcccgattttttcatcaaccttttgctccaatgcttttatagcactggattccaat |
407 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||| |||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2744 |
attgttacttgaccctatttgtgtaataggtccgacgggaaaaaacccgatttttccatcacccttttgctccaatgcttttatagcacttgattccaat |
2645 |
T |
|
| Q |
408 |
gcaaagaaactgttaaacaagattccatcaaacaaaatacatacctagttagcacgttgaagatacattttgtaagcttgacctgatctatctttttgtt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2644 |
gcaaagaaactgttaaacaagattccatc-aacagaatacatacct--ttagcacgttgaagatacattttgtaagcttgacctgatctatc-ttttgtt |
2549 |
T |
|
| Q |
508 |
actgtatgaagatcaataccatttgattgggtacacatcctttgtaactttataggtttcttgtaaatctttggtatttacatgaaacc |
596 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
2548 |
actgtatgaagatcaataccatt--aattggtacacatcc-ttgtaactttatagg-ttcttgtaaatcttt-gtatttacatgaaacc |
2465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 596
Target Start/End: Complemental strand, 57587 - 57008
Alignment:
| Q |
8 |
aacttgaggtgcccatgatggcaacataaaacctttttctttggttctttccaaaaaccctttaggtaaaaatttcagtggatcttcatttgcatcttca |
107 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||| |
|
|
| T |
57587 |
aacttgaggtgcccatgatgccaaaataaaacctttttctttggttctttccaaaaaccctataggtaaaaatttcaaaggatcttcatttgtagattca |
57488 |
T |
|
| Q |
108 |
agataaacagcactaactgaatcacttggttgtctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtcttt |
207 |
Q |
| |
|
|||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| ||| |
|
|
| T |
57487 |
agataagctgcactaactgaatcacttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgttt |
57388 |
T |
|
| Q |
208 |
gagaaagtgttccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaagcattcatgttcatcgccaacaacatc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
57387 |
gagaaagtgttccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcaccaacaacatc |
57288 |
T |
|
| Q |
308 |
attgttacttgaccctatttgtgtaatgggtccgacggggaaaagcccgattttttcatcaaccttttgctccaatgcttttatagcactggattccaat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||| | ||||||| |||||||||||| ||||||| ||||| ||| |
|
|
| T |
57287 |
attgttacttgaccctatttgtgtaatgggtccgacgggaaaaaacccgatttttccataacccttttgttccaatgcttttgtagcacttgattctaat |
57188 |
T |
|
| Q |
408 |
gcaaagaaactgttaaacaagattccatcaaacaaaatacatacctagttagcacgttgaagatacattttgtaagcttgacctgatctatctttttgtt |
507 |
Q |
| |
|
| ||||| || ||||||||||||||||| ||| |||| |||| | || |||||||||||| |||||||||||||| | ||||||||| ||||||| |
|
|
| T |
57187 |
tctaagaagctattaaacaagattccatc-aaccaaatgcata--ttttttgcacgttgaagaagcattttgtaagcttcatttgatctatc-ttttgtt |
57092 |
T |
|
| Q |
508 |
actgtatgaagatcaataccatttgattgggtacacatcctttgtaactttataggtttcttgtaaatctttggtatttacatgaaacc |
596 |
Q |
| |
|
||| |||||||||||||| |||||| || | |||||| ||||||||||||||| ||||| ||||||||| ||||| |||||||||| |
|
|
| T |
57091 |
ggtgttggaagatcaatacca-ttgatt-ggcaaacatcc-ttgtaactttatagg-ttcttttaaatcttt-gtattcacatgaaacc |
57008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 594
Target Start/End: Complemental strand, 22298 - 21724
Alignment:
| Q |
8 |
aacttgaggtgcccatgatggcaacataaaacctttttctttggttctttccaaaaaccctttaggtaaaaatttcagtggatcttcatttgcatcttca |
107 |
Q |
| |
|
|||||| |||||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
22298 |
aacttgtggtgcccatgatggtaaaatcaaacctttttcttttgttctttccaaaaaccctttaggtaaaaatttcagtggatcttcatttgtagcttca |
22199 |
T |
|
| Q |
108 |
agataaacagcactaactgaatcacttggttgtctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtcttt |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| || ||| ||| |
|
|
| T |
22198 |
agataagcagcactaactgaatcacttggtgctctcaatacccaaatgaatctttgaccactcaattccaaaccaaaagctagctcattgatttgtgttt |
22099 |
T |
|
| Q |
208 |
gagaaagtgttccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaagcattcatgttcatcgccaacaacatc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| |||||| || |
|
|
| T |
22098 |
gagaaagtgttccaccacttccaaaagaaacatacaaaactgaattttgtggttggtttttcaaccatttcaaacattcaagttcatcaccaaca---tc |
22002 |
T |
|
| Q |
308 |
attgttacttgaccctatttgtgtaatgggtccgacggggaaaagcccgattttttcatcaaccttttgctccaatgcttttatagcactggattccaat |
407 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| || || |||| | |||||| ||| | ||||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
22001 |
attgttacttaaccctgtttgtgtaatgggtccaacaggaaaaaaatcaatttttccataaccctttagttccaatgcttttatagcacttgattccaat |
21902 |
T |
|
| Q |
408 |
gcaaagaaactgttaaacaagattccatcaaacaaaatacatacctagttagcacgttgaagatacattttgtaagcttgacctgatctatctttttgtt |
507 |
Q |
| |
|
||| ||| || || | |||||||||||||| |||||||||||| | || |||||||||| ||||||||||||| ||| | |||||||||||| ||| |
|
|
| T |
21901 |
tcaatgaagctattgatcaagattccatcaa-caaaatacatactt--tttgcacgttgaatatacattttgtaaccttcatttgatctatcttta-gtt |
21806 |
T |
|
| Q |
508 |
actgtatgaagatcaataccatttgattgggtacacatcctttgtaactttataggtttcttgtaaatctttggtatttacatgaaa |
594 |
Q |
| |
|
||| |||||||||||||||| |||||| |||||| |||| ||||||||||||| ||||||||||||||| ||||| |||||||| |
|
|
| T |
21805 |
gctgctggaagatcaataccatt-gattgg-tacacaccctt-gtaactttatagg-ttcttgtaaatcttt-gtattcacatgaaa |
21724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 60983 - 60890
Alignment:
| Q |
160 |
tttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaacatacaaaacagaatt |
253 |
Q |
| |
|
|||||| ||| |||||||| |||||||||| ||||| | ||| ||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
60983 |
tttgaccacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaacaaacaaaacagaatt |
60890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 8 - 596
Target Start/End: Complemental strand, 16566700 - 16566121
Alignment:
| Q |
8 |
aacttgaggtgcccatgatggcaacataaaacctttttctttggttctttccaaaaaccctttaggtaaaaatttcagtggatcttcatttgcatcttca |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
16566700 |
aacttgaggtgcccatgatggcaaaataaaacctttttctttggttctttccaaaaaccctttaggtaaaaatttcagtggatcttcatttgcatcttta |
16566601 |
T |
|
| Q |
108 |
agataaacagcactaactgaatcacttggttgtctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtcttt |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
16566600 |
agataaacaacactaactgaatcacttggttgtctcacaacccaaatgaatctttggctactcaattccaaaccaaaggctagttcattaatctgtcttt |
16566501 |
T |
|
| Q |
208 |
gagaaagtgttccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaagcattcatgttcatcgccaacaacatc |
307 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
16566500 |
gagaaagtgttccaacacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcaagttcatcgccaacaacatc |
16566401 |
T |
|
| Q |
308 |
attgttacttgaccctatttgtgtaatgggtccgacggggaaaagcccgattttttcatcaaccttttgctccaatgcttttatagcactggattccaat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||| |||||||||| ||||| | ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
16566400 |
attgttacttgaccctatttgtgtaatgggtccgaccggaaaaaacccgatttttccatcaccattttgctccaaagcttttatagcacttgattccaat |
16566301 |
T |
|
| Q |
408 |
gcaaagaaactgttaaacaagattccatcaaacaaaatacatacctagttagcacgttgaagatacattttgtaagcttgacctgatctatctttttgtt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16566300 |
gcaaagaaactgttaaacaagattccatc-aacaaaacacatatct--ttagcacgttgaagatacattttgtaagcttgacctgatctatc-ttttgtt |
16566205 |
T |
|
| Q |
508 |
actgtatgaagatcaataccatttgattgggtacacatcctttgtaactttataggtttcttgtaaatctttggtatttacatgaaacc |
596 |
Q |
| |
|
|||||| |||||||||||||||| | | ||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
16566204 |
actgtaggaagatcaataccatt--aattggtacacatcc-ttgtaactttatagg-ttcttgtaaatcttt-gtatttacatgaaacc |
16566121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 8 - 596
Target Start/End: Original strand, 16598962 - 16599541
Alignment:
| Q |
8 |
aacttgaggtgcccatgatggcaacataaaacctttttctttggttctttccaaaaaccctttaggtaaaaatttcagtggatcttcatttgcatcttca |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
16598962 |
aacttgaggtgcccatgatggcaaaataaaacctttttctttggttctttccaaaaaccctttaggtaaaaatttcagtggatcttcatttgcatcttta |
16599061 |
T |
|
| Q |
108 |
agataaacagcactaactgaatcacttggttgtctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtcttt |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
16599062 |
agataaacaacactaactgaatcacttggttgtctcacaacccaaatgaatctttggctactcaattccaaaccaaaggctagttcattaatctgtcttt |
16599161 |
T |
|
| Q |
208 |
gagaaagtgttccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaagcattcatgttcatcgccaacaacatc |
307 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
16599162 |
gagaaagtgttccaacacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcaagttcatcgccaacaacatc |
16599261 |
T |
|
| Q |
308 |
attgttacttgaccctatttgtgtaatgggtccgacggggaaaagcccgattttttcatcaaccttttgctccaatgcttttatagcactggattccaat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||| |||||||||| ||||| | ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
16599262 |
attgttacttgaccctatttgtgtaatgggtccgaccggaaaaaacccgatttttccatcaccattttgctccaaagcttttatagcacttgattccaat |
16599361 |
T |
|
| Q |
408 |
gcaaagaaactgttaaacaagattccatcaaacaaaatacatacctagttagcacgttgaagatacattttgtaagcttgacctgatctatctttttgtt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16599362 |
gcaaagaaactgttaaacaagattccatc-aacaaaacacatatct--ttagcacgttgaagatacattttgtaagcttgacctgatctatc-ttttgtt |
16599457 |
T |
|
| Q |
508 |
actgtatgaagatcaataccatttgattgggtacacatcctttgtaactttataggtttcttgtaaatctttggtatttacatgaaacc |
596 |
Q |
| |
|
|||||| |||||||||||||||| | | ||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
16599458 |
actgtaggaagatcaataccatt--aattggtacacatcc-ttgtaactttatagg-ttcttgtaaatcttt-gtatttacatgaaacc |
16599541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 16490698 - 16490658
Alignment:
| Q |
210 |
gaaagtgttccaccacttccaaaagaaacatacaaaacaga |
250 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
16490698 |
gaaagtgttccaccacttccaaaagacacaaacaaaacaga |
16490658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 596
Target Start/End: Original strand, 15257 - 15836
Alignment:
| Q |
8 |
aacttgaggtgcccatgatggcaacataaaacctttttctttggttctttccaaaaaccctttaggtaaaaatttcagtggatcttcatttgcatcttca |
107 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||| |
|
|
| T |
15257 |
aacttgaggtgcccatgatgccaaaataaaacctttttctttggttctttccaaaaaccctataggtaaaaatttcaaaggatcttcatttgtagattca |
15356 |
T |
|
| Q |
108 |
agataaacagcactaactgaatcacttggttgtctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtcttt |
207 |
Q |
| |
|
|||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| ||| |
|
|
| T |
15357 |
agataagctgcactaactgaatcacttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgttt |
15456 |
T |
|
| Q |
208 |
gagaaagtgttccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaagcattcatgttcatcgccaacaacatc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
15457 |
gagaaagtgttccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcaccaacaacatc |
15556 |
T |
|
| Q |
308 |
attgttacttgaccctatttgtgtaatgggtccgacggggaaaagcccgattttttcatcaaccttttgctccaatgcttttatagcactggattccaat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||| | ||||||| |||||||||||| ||||||| ||||| ||| |
|
|
| T |
15557 |
attgttacttgaccctatttgtgtaatgggtccgacgggaaaaaacccgatttttccataacccttttgttccaatgcttttgtagcacttgattctaat |
15656 |
T |
|
| Q |
408 |
gcaaagaaactgttaaacaagattccatcaaacaaaatacatacctagttagcacgttgaagatacattttgtaagcttgacctgatctatctttttgtt |
507 |
Q |
| |
|
| ||||| || ||||||||||||||||| ||| |||| |||| | || |||||||||||| |||||||||||||| | ||||||||| ||||||| |
|
|
| T |
15657 |
tctaagaagctattaaacaagattccatc-aaccaaatgcata--ttttttgcacgttgaagaagcattttgtaagcttcatttgatctatc-ttttgtt |
15752 |
T |
|
| Q |
508 |
actgtatgaagatcaataccatttgattgggtacacatcctttgtaactttataggtttcttgtaaatctttggtatttacatgaaacc |
596 |
Q |
| |
|
||| |||||||||||||| |||||| || | |||||| ||||||||||||||| ||||| ||||||||| ||||| |||||||||| |
|
|
| T |
15753 |
ggtgttggaagatcaatacca-ttgatt-ggcaaacatcc-ttgtaactttatagg-ttcttttaaatcttt-gtattcacatgaaacc |
15836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 11861 - 11954
Alignment:
| Q |
160 |
tttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaacatacaaaacagaatt |
253 |
Q |
| |
|
|||||| ||| |||||||| |||||||||| ||||| | ||| ||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
11861 |
tttgaccacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaacaaacaaaacagaatt |
11954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 247
Target Start/End: Original strand, 2018426 - 2018542
Alignment:
| Q |
131 |
acttggttgtctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttcca |
230 |
Q |
| |
|
||||||| ||| |||||||| | |||| | ||| |||||||||||||||| ||||| || ||||| || ||| ||| |||||||| |||||||| ||| |
|
|
| T |
2018426 |
acttggtgatcttacaacccataagaatttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgtgccaccactccca |
2018525 |
T |
|
| Q |
231 |
aaagaaacatacaaaac |
247 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2018526 |
aaagaaacatacaaaac |
2018542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 563924 - 564058
Alignment:
| Q |
105 |
tcaagataaacagcactaactgaatcacttggttgtctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtc |
204 |
Q |
| |
|
|||| ||||| ||||||| || |||| |||||| |||||||||||||| || |||||||||||||||| || || || |||| |||||||| || |
|
|
| T |
563924 |
tcaaaataaatagcactagctatatcatttggttctctcacaacccaaagaaacttttgactactcaattctaaccctaatgctaactcattcatttggt |
564023 |
T |
|
| Q |
205 |
tttgagaaagtgttccaccacttccaaaagaaaca |
239 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||||| |
|
|
| T |
564024 |
tttgagaaattgttccaccactaccaaatgaaaca |
564058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 243
Target Start/End: Original strand, 2015043 - 2015155
Alignment:
| Q |
131 |
acttggttgtctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttcca |
230 |
Q |
| |
|
||||||| ||| |||||||| | |||| | ||| |||||||||||||||| ||||| || ||||| || ||| ||| ||||||||||||||||| || |
|
|
| T |
2015043 |
acttggtgatcttacaacccataagaatttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgttccaccactcccg |
2015142 |
T |
|
| Q |
231 |
aaagaaacataca |
243 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
2015143 |
aaagacacataca |
2015155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 1963373 - 1963270
Alignment:
| Q |
144 |
acaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaacataca |
243 |
Q |
| |
|
|||||||| | |||| | ||| |||||||||||||||| ||||| | |||| || ||| ||| |||||||| |||||||| |||||||||||||||| |
|
|
| T |
1963373 |
acaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacataca |
1963274 |
T |
|
| Q |
244 |
aaac |
247 |
Q |
| |
|
|||| |
|
|
| T |
1963273 |
aaac |
1963270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 280
Target Start/End: Complemental strand, 3701036 - 3700882
Alignment:
| Q |
126 |
gaatcacttggttgtctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccac |
225 |
Q |
| |
|
|||| ||| |||| ||||| |||||| | |||| | ||| ||||||| ||||| || |||||||||||||| || ||| |||||| | ||||| |||| |
|
|
| T |
3701036 |
gaattactaggttctctcaaaacccacaagaatttctgattactcaactccaaccccaaagctagttcattgatttgttgttgagataaagttcctccac |
3700937 |
T |
|
| Q |
226 |
ttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaa |
280 |
Q |
| |
|
||||||| | ||||||||||| || ||| ||| ||| || | |||||| ||||| |
|
|
| T |
3700936 |
ttccaaagcagacatacaaaactgagtttggtgtttgattctccaaccacttcaa |
3700882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 247
Target Start/End: Complemental strand, 5902559 - 5902443
Alignment:
| Q |
131 |
acttggttgtctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttcca |
230 |
Q |
| |
|
||||||| ||| |||||||| | |||| | ||| |||||||||||||||||| ||| | |||| || ||| ||| ||||||| |||||||||||| |
|
|
| T |
5902559 |
acttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagccaactcatcaatttgttcttgtgaaagtgcaccaccacttcca |
5902460 |
T |
|
| Q |
231 |
aaagaaacatacaaaac |
247 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5902459 |
aaagaaacatacaaaac |
5902443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 247
Target Start/End: Complemental strand, 5906043 - 5905927
Alignment:
| Q |
131 |
acttggttgtctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttcca |
230 |
Q |
| |
|
||||||| ||| |||||||| | |||| | ||| |||||||||||||||||| |||||| |||| | ||| ||| ||||||| ||||| |||||| |
|
|
| T |
5906043 |
acttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcagtttgttcttgtgaaagtgcaccaccgcttcca |
5905944 |
T |
|
| Q |
231 |
aaagaaacatacaaaac |
247 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5905943 |
aaagaaacatacaaaac |
5905927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 845290 - 845329
Alignment:
| Q |
211 |
aaagtgttccaccacttccaaaagaaacatacaaaacaga |
250 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
845290 |
aaagtgttccaccacttccaaatgaaacatacaaaacaga |
845329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 875740 - 875779
Alignment:
| Q |
211 |
aaagtgttccaccacttccaaaagaaacatacaaaacaga |
250 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
875740 |
aaagtgttccacaacttccaaatgaaacatacaaaacaga |
875779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 274
Target Start/End: Original strand, 8294638 - 8294772
Alignment:
| Q |
140 |
tctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaaca |
239 |
Q |
| |
|
|||||||||||| | |||| | |||| ||||||||| | ||||||||||| || || | || |||||| ||||||||||||||||||||||| ||| |
|
|
| T |
8294638 |
tctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttccaaaagagaca |
8294737 |
T |
|
| Q |
240 |
tacaaaacagaattttgtggttggtttttcaacca |
274 |
Q |
| |
|
| | ||||||| || || |||| |||| |||||| |
|
|
| T |
8294738 |
aaaagaacagaacttggttgttgattttccaacca |
8294772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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