View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0245-INSERTION-4 (Length: 621)

Name: NF0245-INSERTION-4
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0245-INSERTION-4
NF0245-INSERTION-4
[»] chr1 (11 HSPs)
chr1 (152-621)||(48590939-48591408)
chr1 (152-621)||(48600634-48601103)
chr1 (11-155)||(48590748-48590892)
chr1 (11-155)||(48600443-48600587)
chr1 (8-155)||(48595830-48595977)
chr1 (457-554)||(35109729-35109825)
chr1 (468-546)||(10996771-10996849)
chr1 (575-621)||(48596021-48596067)
chr1 (467-554)||(8281133-8281220)
chr1 (467-539)||(17345733-17345805)
chr1 (467-539)||(50521317-50521389)
[»] chr6 (4 HSPs)
chr6 (467-546)||(1115308-1115387)
chr6 (467-539)||(33721771-33721842)
chr6 (469-551)||(98972-99055)
chr6 (467-536)||(9036093-9036162)
[»] chr2 (4 HSPs)
chr2 (467-554)||(16388259-16388345)
chr2 (467-554)||(16388673-16388759)
chr2 (469-539)||(28770998-28771068)
chr2 (470-538)||(18674621-18674684)
[»] scaffold0076 (1 HSPs)
scaffold0076 (467-539)||(16193-16265)
[»] chr5 (2 HSPs)
chr5 (465-569)||(30899666-30899770)
chr5 (467-536)||(34842415-34842484)
[»] chr8 (4 HSPs)
chr8 (487-567)||(9055022-9055102)
chr8 (487-538)||(5990774-5990825)
chr8 (463-514)||(8863876-8863927)
chr8 (467-538)||(7493283-7493352)
[»] chr4 (5 HSPs)
chr4 (467-545)||(873731-873809)
chr4 (465-511)||(34670937-34670983)
chr4 (513-546)||(8114940-8114973)
chr4 (467-512)||(22660079-22660124)
chr4 (466-539)||(37781672-37781745)
[»] chr7 (3 HSPs)
chr7 (495-536)||(8140952-8140993)
chr7 (467-546)||(5817482-5817559)
chr7 (467-551)||(27984294-27984381)


Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 152 - 621
Target Start/End: Complemental strand, 48591408 - 48590939
Alignment:
Q  152 aattgtattgttcatttatactacaacaacaaccacactgaaatttatcatatcgttcttgttcctttacttcccgtggactccattt-gccacatttcc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  48591408 aattgtattgttcatttatactacaacaacaaccacactgaaattaatcatatcgatcttgttcctttacttcccgtggactccattttgccacatttcc 48591309  T
Q  251 tctcccaatctggtaggtagaacatgtggatgtgatattctgaaggagtagggccagtgaggagatacaaatgaaaatgaaccgcagaaacatatatacc 350  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||| ||||    
T  48591308 tctcccaatttggtaggtagaacatgtgtatgtgatattctgaaggagtagggtcagtgaggagatacaaatgaaaatgagccgtagaaacgtatgtacc 48591209  T
Q  351 gtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaaaatgatgttcgaactattctttttagggaagtgagtgatgttagaatatttt 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48591208 gtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaatatgatgttcgaactattctttttaggggagtgagtgatgttagaatatttt 48591109  T
Q  451 attatataattatatgtgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtc 550  Q
    |||||||||||||||||||||||||||  || ||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||    
T  48591108 attatataattatatgtgttgtgaattcaaataaataatcacatcaataaaacttagatgtgtgaagtaaaagaaatagtaatcaatgaacaaagttgtc 48591009  T
Q  551 tcaataaacaacgacaacagtttctagaattaagtgtagagcaacatcacagccatattcaaaacaataac 621  Q
       |   ||||| ||||||||  |||||||||| ||| |||||||||||||||||||||||||||||||||    
T  48591008 aacaacgacaacaacaacagtc-ctagaattaaatgtggagcaacatcacagccatattcaaaacaataac 48590939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 152 - 621
Target Start/End: Complemental strand, 48601103 - 48600634
Alignment:
Q  152 aattgtattgttcatttatactacaacaacaaccacactgaaatttatcatatcgttcttgttcctttacttcccgtggactccattt-gccacatttcc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  48601103 aattgtattgttcatttatactacaacaacaaccacactgaaattaatcatatcgatcttgttcctttacttcccgtggactccattttgccacatttcc 48601004  T
Q  251 tctcccaatctggtaggtagaacatgtggatgtgatattctgaaggagtagggccagtgaggagatacaaatgaaaatgaaccgcagaaacatatatacc 350  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||| ||||    
T  48601003 tctcccaatttggtaggtagaacatgtgtatgtgatattctgaaggagtagggtcagtgaggagatacaaatgaaaatgagccgtagaaacgtatgtacc 48600904  T
Q  351 gtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaaaatgatgttcgaactattctttttagggaagtgagtgatgttagaatatttt 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48600903 gtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaatatgatgttcgaactattctttttaggggagtgagtgatgttagaatatttt 48600804  T
Q  451 attatataattatatgtgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtc 550  Q
    |||||||||||||||||||||||||||  || ||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||    
T  48600803 attatataattatatgtgttgtgaattcaaataaataatcacatcaataaaacttagatgtgtgaagtaaaagaaatagtaatcaatgaacaaagttgtc 48600704  T
Q  551 tcaataaacaacgacaacagtttctagaattaagtgtagagcaacatcacagccatattcaaaacaataac 621  Q
       |   ||||| ||||||||  |||||||||| ||| |||||||||||||||||||||||||||||||||    
T  48600703 aacaacgacaacaacaacagtc-ctagaattaaatgtggagcaacatcacagccatattcaaaacaataac 48600634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 48590892 - 48590748
Alignment:
Q  11 gggagggtcggcaacatgtgactgtcttgctttctcatgatgaaactaaaaatgtcgttttttattaaaacaaggatagtgttatgcagatctttttacc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48590892 gggagggtcggcaacatgtgactgtcttgctttctcatgatgaaactacaaatgtcgttttttattaaaacaaggatagtgttatgcagatctttttacc 48590793  T
Q  111 actggttggttgttgcttaattaattgaaattacttgcaggaatt 155  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  48590792 actggttggttgttgcttaagtaattaaaattacttgcaggaatt 48590748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 48600587 - 48600443
Alignment:
Q  11 gggagggtcggcaacatgtgactgtcttgctttctcatgatgaaactaaaaatgtcgttttttattaaaacaaggatagtgttatgcagatctttttacc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48600587 gggagggtcggcaacatgtgactgtcttgctttctcatgatgaaactacaaatgtcgttttttattaaaacaaggatagtgttatgcagatctttttacc 48600488  T
Q  111 actggttggttgttgcttaattaattgaaattacttgcaggaatt 155  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  48600487 actggttggttgttgcttaagtaattaaaattacttgcaggaatt 48600443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 48595977 - 48595830
Alignment:
Q  8 aaagggagggtcggcaacatgtgactgtcttgctttctcatgatgaaactaaaaatgtcgttttttattaaaacaaggatagtgttatgcagatcttttt 107  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  48595977 aaagggagggtcggtaacatgtgactgtcttgctttctcattatgaaactacaaatatcgttttttattaaaacaaggatagtgttatgtagatcttttt 48595878  T
Q  108 accactggttggttgttgcttaattaattgaaattacttgcaggaatt 155  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||||    
T  48595877 accactggttggttgttgctcaagtaattaaaattacttgcaggaatt 48595830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 457 - 554
Target Start/End: Complemental strand, 35109825 - 35109729
Alignment:
Q  457 taattatatgtgttgtgaattggaacaaa-taatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaa 554  Q
    ||||||||| ||| ||||||| ||||||| |||||||| ||||||||| ||||||||| ||| ||| ||||||||||||||||  |||||| |||||||    
T  35109825 taattatatctgtagtgaattcgaacaaaataatcacaccaataaaacttagatgtgtagaggaaaggaagtagtaatcaatg--caaagtagtctcaa 35109729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 468 - 546
Target Start/End: Original strand, 10996771 - 10996849
Alignment:
Q  468 gttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagt 546  Q
    |||||||||| ||||||| ||||||| ||||||||| || || ||| |||||||  ||||||||||||||||| |||||    
T  10996771 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtagagtaaagaaagtagtaatcaatgaataaagt 10996849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 575 - 621
Target Start/End: Complemental strand, 48596067 - 48596021
Alignment:
Q  575 tagaattaagtgtagagcaacatcacagccatattcaaaacaataac 621  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  48596067 tagaattaagtgtggagcaacatcagagccatattcaaaacaataac 48596021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 554
Target Start/End: Original strand, 8281133 - 8281220
Alignment:
Q  467 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaa 554  Q
    |||||||||||  ||| |||||| | | ||||| ||| ||||||||| || |||| ||| |||||||||||||| ||||| |||||||    
T  8281133 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaaatagtaatcaatgaataaagtagtctcaa 8281220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 539
Target Start/End: Complemental strand, 17345805 - 17345733
Alignment:
Q  467 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 539  Q
    ||||||||||| | ||||  || |||| |||| ||||  |||||||||||| ||| |||||||||||||||||    
T  17345805 tgttgtgaattcggacaagaaaccacaccaatgaaacaaagatgtgtggagcaaaggaagtagtaatcaatga 17345733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 539
Target Start/End: Complemental strand, 50521389 - 50521317
Alignment:
Q  467 tgttgtgaattggaacaaataatcacatcaataaaaccta--gatgtgtggagtaaaagaagtagtaatcaatga 539  Q
    ||||||||||| | |||||  |||||||||||||||  ||  ||||||||||||||| ||||| |||||||||||    
T  50521389 tgttgtgaattcggacaaa--atcacatcaataaaaaataaagatgtgtggagtaaaggaagtggtaatcaatga 50521317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 467 - 546
Target Start/End: Complemental strand, 1115387 - 1115308
Alignment:
Q  467 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagt 546  Q
    ||||||||||| || ||||||||| || ||||||||| ||||| | ||||||||||||||||||||||||||| ||||||    
T  1115387 tgttgtgaatttgagcaaataatcgcaccaataaaacttagatatatggagtaaaagaagtagtaatcaatgagcaaagt 1115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 467 - 539
Target Start/End: Complemental strand, 33721842 - 33721771
Alignment:
Q  467 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 539  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||  ||| |||||||||||| ||||    
T  33721842 tgttgtgaatttgaacaaataatcacatcaataaaacc-agatgtgtggaacaaaggaagtagtaatcgatga 33721771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 469 - 551
Target Start/End: Original strand, 98972 - 99055
Alignment:
Q  469 ttgtgaattggaacaaataa-tcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtct 551  Q
    ||||||||| || ||||||| ||||  ||||||||| || | |||||||||||| ||||||||||||||||| |||||| ||||    
T  98972 ttgtgaattcgagcaaataaatcacgccaataaaacttaaacgtgtggagtaaaggaagtagtaatcaatgagcaaagtagtct 99055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 536
Target Start/End: Original strand, 9036093 - 9036162
Alignment:
Q  467 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaa 536  Q
    ||||||||||| || |||||||| ||| ||||||| | ||||| ||||||| ||| ||||||||||||||    
T  9036093 tgttgtgaatttgatcaaataattacaccaataaatcttagatatgtggagcaaatgaagtagtaatcaa 9036162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 467 - 554
Target Start/End: Original strand, 16388259 - 16388345
Alignment:
Q  467 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaa 554  Q
    ||||||||||| ||||||||||||||| | ||||| | ||||||||||||| |||  ||||||||||||||||| ||||| |||||||    
T  16388259 tgttgtgaattcgaacaaataatcacaccgataaa-cttagatgtgtggagcaaagaaagtagtaatcaatgaataaagtagtctcaa 16388345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 467 - 554
Target Start/End: Complemental strand, 16388759 - 16388673
Alignment:
Q  467 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaa 554  Q
    |||||||||||  |||||||||||||||||||||| | ||||||||||||| ||||  |||||||||||||||  ||||| |||||||    
T  16388759 tgttgtgaattcaaacaaataatcacatcaataaa-cttagatgtgtggagcaaaaatagtagtaatcaatgagtaaagtagtctcaa 16388673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 469 - 539
Target Start/End: Complemental strand, 28771068 - 28770998
Alignment:
Q  469 ttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 539  Q
    ||||||||| ||||||||||||| ||||||||||  |||| |||||| | ||| |||||||||||||||||    
T  28771068 ttgtgaatttgaacaaataatcatatcaataaaatttagacgtgtggtgcaaatgaagtagtaatcaatga 28770998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 470 - 538
Target Start/End: Complemental strand, 18674684 - 18674621
Alignment:
Q  470 tgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatg 538  Q
    ||||||||  ||||||||||||||||||||     |||||||||| ||||||  |||||||||||||||    
T  18674684 tgtgaattcaaacaaataatcacatcaata-----tagatgtgtgaagtaaagaaagtagtaatcaatg 18674621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 467 - 539
Target Start/End: Complemental strand, 16265 - 16193
Alignment:
Q  467 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 539  Q
    ||||||||||| |||| |||||| ||| ||||||||| ||||||||| ||| ||| |||||||||||||||||    
T  16265 tgttgtgaatttgaactaataattacaccaataaaacttagatgtgtcgagcaaaggaagtagtaatcaatga 16193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 465 - 569
Target Start/End: Original strand, 30899666 - 30899770
Alignment:
Q  465 tgtgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaataaacaacga 564  Q
    |||||||||||||  |||||  || || ||||||||||| |||||||||||||  |||||| ||||||||||||| |||||| | |||||  |||||| |    
T  30899666 tgtgttgtgaattcaaacaataaaacatatcaataaaacttagatgtgtggagctaaagaaatagtaatcaatgagcaaagtagcctcaagcaacaacaa 30899765  T
Q  565 caaca 569  Q
    |||||    
T  30899766 caaca 30899770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 536
Target Start/End: Original strand, 34842415 - 34842484
Alignment:
Q  467 tgttgtgaattggaacaa-ataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaa 536  Q
    ||||||||||| |||||| | ||||||| ||||||| | ||||||||||||||||| ||||||||||||||    
T  34842415 tgttgtgaattagaacaataaaatcacaccaataaa-cttagatgtgtggagtaaaggaagtagtaatcaa 34842484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 487 - 567
Target Start/End: Complemental strand, 9055102 - 9055022
Alignment:
Q  487 aatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaataaacaacgacaa 567  Q
    |||||||||||| ||||   ||||||||||||||| |||||| ||||||||| | ||||| ||||||| ||||||| ||||    
T  9055102 aatcacatcaatgaaacaatgatgtgtggagtaaaggaagtactaatcaatggataaagtagtctcaaaaaacaacaacaa 9055022  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 538
Target Start/End: Complemental strand, 5990825 - 5990774
Alignment:
Q  487 aatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatg 538  Q
    |||||||||||||||||  ||||||| |||| ||| ||||||||||||||||    
T  5990825 aatcacatcaataaaacaaagatgtgcggagcaaaggaagtagtaatcaatg 5990774  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 8863927 - 8863876
Alignment:
Q  463 tatgtgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtg 514  Q
    |||||| |||||||| ||||||||||||||| ||||||||| || |||||||    
T  8863927 tatgtgctgtgaattcgaacaaataatcacaccaataaaacttaaatgtgtg 8863876  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 538
Target Start/End: Complemental strand, 7493352 - 7493283
Alignment:
Q  467 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatg 538  Q
    ||||||||||| | |||||  |||||| |||||||||   ||||||||||| ||| ||||||||||||||||    
T  7493352 tgttgtgaattcggacaaa--atcacaccaataaaactatgatgtgtggagcaaaggaagtagtaatcaatg 7493283  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 545
Target Start/End: Complemental strand, 873809 - 873731
Alignment:
Q  467 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaag 545  Q
    |||||||||||  |||||||||| ||| ||||||||| ||||||| | ||||||  ||||| ||||||||||| |||||    
T  873809 tgttgtgaatttaaacaaataattacaccaataaaacttagatgtatagagtaatggaagttgtaatcaatgagcaaag 873731  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 465 - 511
Target Start/End: Complemental strand, 34670983 - 34670937
Alignment:
Q  465 tgtgttgtgaattggaacaaataatcacatcaataaaacctagatgt 511  Q
    ||||||||||||| ||||||||||||||| ||||||||  |||||||    
T  34670983 tgtgttgtgaattcgaacaaataatcacaccaataaaatttagatgt 34670937  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 546
Target Start/End: Complemental strand, 8114973 - 8114940
Alignment:
Q  513 tggagtaaaagaagtagtaatcaatgaacaaagt 546  Q
    ||||||||||||||||||||||||||| ||||||    
T  8114973 tggagtaaaagaagtagtaatcaatgaccaaagt 8114940  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 512
Target Start/End: Complemental strand, 22660124 - 22660079
Alignment:
Q  467 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtg 512  Q
    ||||||||||| ||||||||||||||| |||| |||| ||||||||    
T  22660124 tgttgtgaattcgaacaaataatcacaccaatgaaacttagatgtg 22660079  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 539
Target Start/End: Original strand, 37781672 - 37781745
Alignment:
Q  466 gtgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 539  Q
    ||||||||||||  |||||||||| | |  |||||||| |||| |||||||| |||||||||||| || |||||    
T  37781672 gtgttgtgaattcaaacaaataattataataataaaacttagaagtgtggagcaaaagaagtagtcattaatga 37781745  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 536
Target Start/End: Complemental strand, 8140993 - 8140952
Alignment:
Q  495 caataaaacctagatgtgtggagtaaaagaagtagtaatcaa 536  Q
    |||||||||  |||||||||||| ||||||||||||||||||    
T  8140993 caataaaactaagatgtgtggagcaaaagaagtagtaatcaa 8140952  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 546
Target Start/End: Complemental strand, 5817559 - 5817482
Alignment:
Q  467 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagt 546  Q
    ||||||||||| | |||||  ||||||||||||||||  ||||||||| || |||  ||||| ||||||||| |||||||    
T  5817559 tgttgtgaattcgtacaaa--atcacatcaataaaacaaagatgtgtgaagcaaagtaagtattaatcaatggacaaagt 5817482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 551
Target Start/End: Original strand, 27984294 - 27984381
Alignment:
Q  467 tgttgtgaattggaacaaataa-tcacatcaataaaacctagatgtgtggagtaaaagaagtag--taatcaatgaacaaagttgtct 551  Q
    |||||||||||  ||||||||| ||||||||||||||| || |||| ||||| ||| ||| |||  ||||||||||| ||||| ||||    
T  27984294 tgttgtgaattcaaacaaataaatcacatcaataaaacttatatgtttggagcaaaggaattagtataatcaatgaataaagtagtct 27984381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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