View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0245-INSERTION-6 (Length: 660)

Name: NF0245-INSERTION-6
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0245-INSERTION-6
NF0245-INSERTION-6
[»] chr1 (5 HSPs)
chr1 (50-317)||(38449801-38450068)
chr1 (312-630)||(38447789-38448096)
chr1 (312-630)||(38550173-38550480)
chr1 (3-48)||(38448246-38448291)
chr1 (3-48)||(38549980-38550025)
[»] chr4 (2 HSPs)
chr4 (465-630)||(55780613-55780778)
chr4 (465-630)||(55844793-55844958)
[»] chr5 (1 HSPs)
chr5 (398-450)||(38448347-38448399)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 50 - 317
Target Start/End: Original strand, 38449801 - 38450068
Alignment:
Q  50 ttgctatagtcaatttttggaagatgataagtattctagtacaaaagaatggtcttcaactgacctctgaagcttgttttgtagtagatttcatacaaga 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38449801 ttgctatagtcaatttttggaagatgataagtattctagtacaaaaaaatgatcttcaactgacctctgaagcttgttttgtagtagatttcatacaaga 38449900  T
Q  150 catctcttatgaactacttattccggcctttttgaacataatggggtggcaaaatttcgaagcactagttatgggggttgctactatttttcatgaacaa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38449901 catctcttatgaactacttattccggcctttttgaacataatggggtggcaaaatttcgaagcactagttatgggggttgctactatttttcatgaacaa 38450000  T
Q  250 gaatcttatcattatcatcctgggtttttatggaagatcaataaatttgtttacttttttgtcaattg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38450001 gaatcttatcattatcatcctgggtttttatggaagatcaataaatttgttcacttttttgtcaattg 38450068  T

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Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 312 - 630
Target Start/End: Original strand, 38447789 - 38448096
Alignment:
Q  312 caattgctttggaggaaggtgttgatgaaaaccagatcattttctttgagaattacttatacggttatttggtttgactatgagttatccagatcttttg 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||               
T  38447789 caattgctttggaggaaggtgttgatgaaaaccagatcattttctttgaggattacttatacggttatttggtttgactatgagttatc----------- 38447877  T
Q  412 tttgacacaatgatgccattagacacctgcatggcattcattctaccacaaaatgtatcatgaatgttttgtctaaacaaccttatttgatagatcaatt 511  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  38447878 -ttgacacaatgatgccattagacacctgcatggcattcattctaccacaaaatgtatcacgaatgttttgtctaaacaaccttatttgatatatcaatt 38447976  T
Q  512 taatgtattctactgcctgtatatgtttcagagcttctataagagtatcttttttgttaag--tatctcttggtcctcttatacatttgtttctgctggt 609  Q
    ||||||||||||||| | | |||||||||||||||||||||||||||| |||||| || ||  ||| | ||| |||||||||||||||||||| ||||||    
T  38447977 taatgtattctactgtcagcatatgtttcagagcttctataagagtatattttttcttgagtatatatattgctcctcttatacatttgtttcagctggt 38448076  T
Q  610 tttagttaacgtacattctaa 630  Q
    |||||||||| ||||||||||    
T  38448077 tttagttaac-tacattctaa 38448096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 312 - 630
Target Start/End: Complemental strand, 38550480 - 38550173
Alignment:
Q  312 caattgctttggaggaaggtgttgatgaaaaccagatcattttctttgagaattacttatacggttatttggtttgactatgagttatccagatcttttg 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||               
T  38550480 caattgctttggaggaaggtgttgatgaaaaccagatcattttctttgaggattacttatacggttatttggtttgactatgagttatc----------- 38550392  T
Q  412 tttgacacaatgatgccattagacacctgcatggcattcattctaccacaaaatgtatcatgaatgttttgtctaaacaaccttatttgatagatcaatt 511  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  38550391 -ttgacacaatgatgccattagacacctgcatggcattcattctaccacaaaatgtatcacgaatgttttgtctaaacaaccttatttgatatatcaatt 38550293  T
Q  512 taatgtattctactgcctgtatatgtttcagagcttctataagagtatcttttttgttaag--tatctcttggtcctcttatacatttgtttctgctggt 609  Q
    ||||||||||||||| | | |||||||||||||||||||||||||||| |||||| || ||  ||| | ||| |||||||||||||||||||| ||||||    
T  38550292 taatgtattctactgtcagcatatgtttcagagcttctataagagtatattttttcttgagtatatatattgctcctcttatacatttgtttcagctggt 38550193  T
Q  610 tttagttaacgtacattctaa 630  Q
    |||||||||| ||||||||||    
T  38550192 tttagttaac-tacattctaa 38550173  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 38448246 - 38448291
Alignment:
Q  3 caacaattcaaactcaacttcatcaacaactactgaattgaatcat 48  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  38448246 caaccattcaaactcaacttcatcaacaactactgaattgaatcat 38448291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 38550025 - 38549980
Alignment:
Q  3 caacaattcaaactcaacttcatcaacaactactgaattgaatcat 48  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  38550025 caaccattcaaactcaacttcatcaacaactactgaattgaatcat 38549980  T

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Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 465 - 630
Target Start/End: Complemental strand, 55780778 - 55780613
Alignment:
Q  465 tgtatcatgaatgttttgtctaaacaaccttatttgatagatcaatttaatgtattctactgcctgtatatgtttcagagcttctataagagtatctttt 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||    
T  55780778 tgtatcatgaatgttttgtctaaacaaccttatttgatagatcaatttaatgtattctactgtcagcatatgtttcagagcttctataagagtatctttt 55780679  T
Q  565 ttgttaagtatctcttggtcctcttatacatttgtttctgctggttttagttaacgtacattctaa 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55780678 ttgttaagtatctcttggtcctcttatacatttgtttctgctggttttagttaacgtacattctaa 55780613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 465 - 630
Target Start/End: Complemental strand, 55844958 - 55844793
Alignment:
Q  465 tgtatcatgaatgttttgtctaaacaaccttatttgatagatcaatttaatgtattctactgcctgtatatgtttcagagcttctataagagtatctttt 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||    
T  55844958 tgtatcatgaatgttttgtctaaacaaccttatttgatagatcaatttaatgtattctactgtcagcatatgtttcagagcttctataagagtatctttt 55844859  T
Q  565 ttgttaagtatctcttggtcctcttatacatttgtttctgctggttttagttaacgtacattctaa 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55844858 ttgttaagtatctcttggtcctcttatacatttgtttctgctggttttagttaacgtacattctaa 55844793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 450
Target Start/End: Original strand, 38448347 - 38448399
Alignment:
Q  398 atccagatcttttgtttgacacaatgatgccattagacacctgcatggcattc 450  Q
    ||||||||||||||||  |||||| |||| ||||||| |||| ||||||||||    
T  38448347 atccagatcttttgttcaacacaacgatgtcattagaaacctacatggcattc 38448399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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