View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0245-INSERTION-7 (Length: 663)
Name: NF0245-INSERTION-7
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0245-INSERTION-7 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 599; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 8 - 663
Target Start/End: Original strand, 45935383 - 45936038
Alignment:
| Q |
8 |
gatccatgtagcggacctcacttagtgggataatcttggtcgtcgtcgttgttgttgtacatagccaacaacaatttttgctcattttgctattgtatga |
107 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45935383 |
gatccatgtaacggacctcacttagtgggataatcttggtcgttgttgttgttgttgtacatagccaacaacaattttttctcattttgctattgtatga |
45935482 |
T |
|
| Q |
108 |
tatgtattaggaagattgaagaagattttatagaggcttagatatatttttaagtctttaaatatgcttcattttgttttggtctctgcaaaagaagttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45935483 |
tatgtattaggaagattgaagaagattttatagaggcttagatatatttttaagtctttaaatatgcttcattttgttttggtctctgcaaaagaagttg |
45935582 |
T |
|
| Q |
208 |
tggtttaaatatgattttaatccctgaaattataacannnnnnnctttctcttttgcaatcgagattgcacaaacatgcaggggactcttgaagtgggct |
307 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45935583 |
tggtttaaatatgattttaattcctgaaattataacatttttttctttctcttttgcaatcaagattgcacaaacatgcaggggactcttgaagtgggct |
45935682 |
T |
|
| Q |
308 |
aaactatgggcttcagtgagagaactttcaagagcatatgaatatgtaatggggttgataattttcatgccagcagcagttttatcatggttcccatttg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45935683 |
aaactatgggcttcagtgagagaactttcaagagcatatgaatatgtaatggggttgataattttcatgccagcagcagttttatcatggttcccatttg |
45935782 |
T |
|
| Q |
408 |
tgtcggagttccaaacccggttgctattcaatcaagcatgtagtagaggacttcagatttcaaggattcttgctggaaagaaagacactaataaaactga |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45935783 |
tgtcggagttccaaacccggttgctattcaatcaagcatgtagtagaggacttcagatttcaaggattcttgctggaaagaaagacactaataaaactga |
45935882 |
T |
|
| Q |
508 |
atgatgttttattatatttttcaggtaacatcttgcatttcctatatgattttaatttatatgcgccgtcaatgtaaagattttttcgctcgtaattttt |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45935883 |
atgatgttttattatatttttcaggtaacatcttgcatttcctatatgattttaatttatatgcgccgtcaatgtaaagattttttcactcgtaattttt |
45935982 |
T |
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| Q |
608 |
atatcattaaaagcatgtaactttaacgataactacttctaaactcgtacatatga |
663 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45935983 |
atatcattaaaaccatttaactttaacgataactacttctaaactcgtacatatga |
45936038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 30202179 - 30202118
Alignment:
| Q |
8 |
gatccatgtagcggacctcacttagtgggataa-tcttggtcgtcgtcgttgttgttgtaca |
68 |
Q |
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|||||||||||| |||| ||||||||||||||| |||||| || || |||||||||||||| |
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| T |
30202179 |
gatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttgttgttgtaca |
30202118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 7124374 - 7124406
Alignment:
| Q |
8 |
gatccatgtagcggacctcacttagtgggataa |
40 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |
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| T |
7124374 |
gatccatgtagctgacctcacttagtgggataa |
7124406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 25715375 - 25715343
Alignment:
| Q |
8 |
gatccatgtagcggacctcacttagtgggataa |
40 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |
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| T |
25715375 |
gatccatgtagccgacctcacttagtgggataa |
25715343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 44751717 - 44751749
Alignment:
| Q |
8 |
gatccatgtagcggacctcacttagtgggataa |
40 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |
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| T |
44751717 |
gatccatgtagccgacctcacttagtgggataa |
44751749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 166 - 560
Target Start/End: Original strand, 15817624 - 15818016
Alignment:
| Q |
166 |
taaatatgcttcattttgttttggtctctgcaaaagaagttgtggtttaaatatgattttaatccctgaaattataacannnnnnnctttctcttttgca |
265 |
Q |
| |
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|||||||||||| ||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
15817624 |
taaatatgcttctttttgttttagtctctgcaaaaaaagtttcggtttaaatatgattttaatccctgaaattataacatttttttct--ctcttttgca |
15817721 |
T |
|
| Q |
266 |
atcgagattgcacaaacatgcaggggactcttgaagtgggctaaactatgggcttcagtgagagaactttcaagagcatatgaatatgtaatggggttga |
365 |
Q |
| |
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||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15817722 |
atcaagattgcacaaacatgtaggggactcttgaagtgggcgaaactatgggcttcagtgagagaactttcaagagcatatgaatatgtaatgggattga |
15817821 |
T |
|
| Q |
366 |
taattttcatgccagcagcagttttatcatggttcccatttgtgtcggagttccaaacccggttgctattcaatcaagcatgtagtagaggacttcagat |
465 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
15817822 |
taattttcatgccaacagcagttttatcgtggttcccatttgtgtcggagttccaaacgcggttgctattcaatcaagcatttagtagaggacttcagat |
15817921 |
T |
|
| Q |
466 |
ttcaaggattcttgctggaaagaaagacactaataaaactgaatgatgttttattatatttttcaggtaacatcttgcatttcctatatgatttt |
560 |
Q |
| |
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||||| ||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15817922 |
ttcaatgattcttgctggaaagaaagacacttacaaaactgaatgatgttttatcatatttttcaggtaacatcttgcatttcctatatgatttt |
15818016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 602 - 663
Target Start/End: Original strand, 15818012 - 15818073
Alignment:
| Q |
602 |
atttttatatcattaaaagcatgtaactttaacgataactacttctaaactcgtacatatga |
663 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||| |
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|
| T |
15818012 |
atttttatatcattaaaaccatttaactttaacgataacgtcttctaaactcgtacatatga |
15818073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 462
Target Start/End: Complemental strand, 43953349 - 43953280
Alignment:
| Q |
393 |
catggttcccatttgtgtcggagttccaaacccggttgctattcaatcaagcatgtagtagaggacttca |
462 |
Q |
| |
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| T |
43953349 |
catggttcccatttgtttcagaattccaaaccaggctgctattcaaccaagcattcagcagaggacttca |
43953280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 40672416 - 40672384
Alignment:
| Q |
8 |
gatccatgtagcggacctcacttagtgggataa |
40 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
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|
| T |
40672416 |
gatccatgtagctgacctcacttagtgggataa |
40672384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 472 - 661
Target Start/End: Original strand, 5164246 - 5164434
Alignment:
| Q |
472 |
gattcttgctggaaagaaagacactaataaaactgaatgatgttttattatatttttcaggtaacatcttgcatttcctatatgattttaatttatatgc |
571 |
Q |
| |
|
||||||||| ||||||||||||||| | |||||| |||||| | |||| ||| ||||| |||||||| || || |||| ||| | |||||||||||||| |
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|
| T |
5164246 |
gattcttgccggaaagaaagacacttacaaaactaaatgatatgttatcataattttccggtaacattttccacttcc--tattagtttaatttatatgc |
5164343 |
T |
|
| Q |
572 |
gccgtcaatgtaaagatttttt-cgctcgtaatttttatatcattaaaagcatgtaactttaacgataactacttctaaactcgtacatat |
661 |
Q |
| |
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| | |||| |||||||||||| | || | |||| | |||||||| ||| ||| |||||| || |||||||||||||||| | |||||||| |
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|
| T |
5164344 |
acagccaatttaaagattttttacacttgcaattgtcatatcattgaaatcatttaacttcaatgataactacttctaaagttgtacatat |
5164434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 472 - 593
Target Start/End: Original strand, 5191687 - 5191807
Alignment:
| Q |
472 |
gattcttgctggaaagaaa-gacactaataaaactgaatgatgttttattatatttttcaggtaacatcttgcatttcctatatgattttaatttatatg |
570 |
Q |
| |
|
|||||||||| |||| ||| |||||| | ||||||||||||| | |||| ||||||||| |||||||||||||| || | || || ||||||||||||| |
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|
| T |
5191687 |
gattcttgcttgaaaaaaaagacacttacaaaactgaatgatatgttatcatatttttcgggtaacatcttgcaatt--tttacgagtttaatttatatg |
5191784 |
T |
|
| Q |
571 |
cgccgtcaatgtaaagatttttt |
593 |
Q |
| |
|
||| ||||| |||||| ||||| |
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|
| T |
5191785 |
tgccatcaatttaaagacttttt |
5191807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 4441086 - 4441145
Alignment:
| Q |
8 |
gatccatgtagcggacctcacttagtgggataa-tcttggtcgtcgtcgttgttgttgta |
66 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
4441086 |
gatccatgtagccgaccccacttagtgggataaggcttcgtcgtcgttgttgttgttgta |
4441145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 1380603 - 1380635
Alignment:
| Q |
8 |
gatccatgtagcggacctcacttagtgggataa |
40 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
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|
| T |
1380603 |
gatccatgtagccgacctcacttagtgggataa |
1380635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 47265244 - 47265212
Alignment:
| Q |
8 |
gatccatgtagcggacctcacttagtgggataa |
40 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
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|
| T |
47265244 |
gatccatgtagccgacctcacttagtgggataa |
47265212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 56375523 - 56375555
Alignment:
| Q |
8 |
gatccatgtagcggacctcacttagtgggataa |
40 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
56375523 |
gatccatgtagccgacctcacttagtgggataa |
56375555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 6375101 - 6375157
Alignment:
| Q |
8 |
gatccatgtagcggacctcacttagtgggataa-tcttggtcgtcgtcgttgttgtt |
63 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| |||||| || |||||||||||| |
|
|
| T |
6375101 |
gatccatgtagccgaccccacttagtgggataaggcttggttgttgtcgttgttgtt |
6375157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 29650617 - 29650677
Alignment:
| Q |
8 |
gatccatgtagcggacctcacttagtgggataa-tcttggtcgtcgtcgttgttgttgtac |
67 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| |||||| || || ||||||||||||| |
|
|
| T |
29650617 |
gatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttgttgttgtac |
29650677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 30031489 - 30031521
Alignment:
| Q |
8 |
gatccatgtagcggacctcacttagtgggataa |
40 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
30031489 |
gatccatgtagccgacctcacttagtgggataa |
30031521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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