View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0245-INSERTION-8 (Length: 598)

Name: NF0245-INSERTION-8
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0245-INSERTION-8
NF0245-INSERTION-8
[»] chr7 (11 HSPs)
chr7 (170-598)||(47427263-47427670)
chr7 (1-173)||(47428088-47428260)
chr7 (172-224)||(33645922-33645975)
chr7 (170-215)||(36598316-36598361)
chr7 (378-457)||(5006558-5006637)
chr7 (172-215)||(36537973-36538016)
chr7 (172-215)||(27626085-27626128)
chr7 (175-226)||(39591463-39591514)
chr7 (188-226)||(28520990-28521028)
chr7 (182-223)||(30134106-30134147)
chr7 (394-510)||(44151476-44151592)
[»] chr8 (22 HSPs)
chr8 (182-230)||(30987963-30988011)
chr8 (182-230)||(27645954-27646002)
chr8 (182-230)||(31875567-31875615)
chr8 (190-230)||(43709312-43709352)
chr8 (378-497)||(28769348-28769467)
chr8 (172-215)||(37740389-37740432)
chr8 (285-353)||(34563174-34563244)
chr8 (173-215)||(40071814-40071856)
chr8 (188-226)||(45071428-45071466)
chr8 (172-229)||(11415205-11415262)
chr8 (299-355)||(14482124-14482181)
chr8 (183-224)||(26479841-26479882)
chr8 (182-215)||(30191113-30191146)
chr8 (183-224)||(30259170-30259211)
chr8 (182-215)||(30600321-30600354)
chr8 (276-355)||(35453690-35453771)
chr8 (175-212)||(40280191-40280228)
chr8 (299-355)||(40280296-40280353)
chr8 (182-230)||(6509275-6509323)
chr8 (172-224)||(6950378-6950430)
chr8 (171-215)||(30918177-30918221)
chr8 (256-354)||(35869760-35869860)
[»] chr6 (17 HSPs)
chr6 (392-458)||(1402952-1403018)
chr6 (172-224)||(2460113-2460165)
chr6 (172-226)||(32917251-32917305)
chr6 (299-355)||(4248880-4248937)
chr6 (182-226)||(27857412-27857456)
chr6 (182-214)||(34939579-34939611)
chr6 (188-226)||(1669776-1669814)
chr6 (188-226)||(6310228-6310266)
chr6 (172-214)||(24782257-24782299)
chr6 (296-353)||(10749316-10749373)
chr6 (182-215)||(31594356-31594389)
chr6 (182-215)||(32577958-32577991)
chr6 (172-224)||(281810-281862)
chr6 (183-215)||(10616514-10616546)
chr6 (188-224)||(20377898-20377934)
chr6 (248-292)||(24782046-24782090)
chr6 (183-215)||(34404605-34404637)
[»] chr5 (16 HSPs)
chr5 (172-230)||(32172703-32172761)
chr5 (256-351)||(18704083-18704179)
chr5 (378-439)||(35135729-35135790)
chr5 (182-226)||(38047851-38047895)
chr5 (392-456)||(39128595-39128659)
chr5 (189-232)||(11457146-11457189)
chr5 (172-215)||(12242672-12242715)
chr5 (245-327)||(16889686-16889769)
chr5 (189-224)||(18700440-18700475)
chr5 (172-215)||(37611177-37611220)
chr5 (172-215)||(37787907-37787950)
chr5 (188-226)||(40499704-40499742)
chr5 (378-415)||(33459026-33459063)
chr5 (299-355)||(35095874-35095931)
chr5 (398-454)||(8158353-8158409)
chr5 (182-230)||(11297168-11297216)
[»] chr3 (19 HSPs)
chr3 (172-230)||(25182949-25183007)
chr3 (182-235)||(31403063-31403116)
chr3 (393-461)||(37689429-37689497)
chr3 (301-353)||(16790181-16790234)
chr3 (378-438)||(1395613-1395673)
chr3 (172-224)||(24281103-24281155)
chr3 (172-215)||(2321243-2321286)
chr3 (376-458)||(24235731-24235813)
chr3 (377-439)||(29771750-29771812)
chr3 (182-224)||(37273190-37273232)
chr3 (182-215)||(2606282-2606315)
chr3 (392-497)||(36646391-36646496)
chr3 (256-320)||(37689431-37689496)
chr3 (182-215)||(40880920-40880953)
chr3 (183-224)||(49845513-49845554)
chr3 (183-215)||(1810042-1810074)
chr3 (182-230)||(29113512-29113560)
chr3 (172-220)||(49605813-49605861)
chr3 (175-215)||(53735937-53735977)
[»] chr2 (17 HSPs)
chr2 (299-355)||(28803597-28803654)
chr2 (189-226)||(6561391-6561428)
chr2 (393-458)||(18962086-18962151)
chr2 (182-230)||(4550797-4550845)
chr2 (257-354)||(17952749-17952848)
chr2 (188-226)||(14316123-14316161)
chr2 (172-226)||(34651998-34652052)
chr2 (396-438)||(37292415-37292457)
chr2 (183-228)||(1742005-1742050)
chr2 (182-215)||(15120248-15120281)
chr2 (392-437)||(17952770-17952815)
chr2 (173-226)||(28803493-28803546)
chr2 (299-355)||(43431535-43431592)
chr2 (378-458)||(10143114-10143194)
chr2 (257-320)||(18962086-18962150)
chr2 (172-216)||(27699491-27699535)
chr2 (392-440)||(31461394-31461442)
[»] chr4 (21 HSPs)
chr4 (172-224)||(27123314-27123366)
chr4 (182-230)||(49893366-49893414)
chr4 (381-439)||(30024645-30024703)
chr4 (379-497)||(49219082-49219200)
chr4 (182-226)||(2996627-2996671)
chr4 (182-230)||(27725264-27725312)
chr4 (392-439)||(4071838-4071885)
chr4 (299-349)||(4071811-4071861)
chr4 (172-230)||(6987703-6987761)
chr4 (262-319)||(35900305-35900363)
chr4 (191-225)||(46175658-46175692)
chr4 (296-334)||(47800574-47800612)
chr4 (172-226)||(50799992-50800046)
chr4 (182-223)||(23676753-23676794)
chr4 (259-327)||(24929444-24929513)
chr4 (392-453)||(45128363-45128424)
chr4 (182-223)||(53155317-53155358)
chr4 (257-320)||(5219548-5219612)
chr4 (172-224)||(6428074-6428126)
chr4 (183-215)||(7749064-7749096)
chr4 (256-354)||(24443961-24444061)
[»] chr1 (22 HSPs)
chr1 (262-355)||(52286600-52286695)
chr1 (172-226)||(15581308-15581362)
chr1 (187-228)||(17631079-17631120)
chr1 (378-459)||(48830123-48830204)
chr1 (175-215)||(49521770-49521810)
chr1 (172-215)||(4363596-4363639)
chr1 (183-230)||(11560535-11560582)
chr1 (299-357)||(16982027-16982086)
chr1 (172-215)||(23373275-23373318)
chr1 (189-228)||(37175903-37175942)
chr1 (376-439)||(49517010-49517073)
chr1 (299-352)||(36641800-36641854)
chr1 (172-213)||(4033979-4034020)
chr1 (182-223)||(4549513-4549554)
chr1 (378-439)||(15360836-15360897)
chr1 (382-439)||(29007783-29007840)
chr1 (245-293)||(15361699-15361747)
chr1 (183-215)||(16980868-16980900)
chr1 (190-226)||(17628653-17628689)
chr1 (393-437)||(28467376-28467420)
chr1 (172-212)||(37272556-37272596)
chr1 (383-439)||(44936657-44936713)
[»] scaffold0590 (1 HSPs)
scaffold0590 (378-435)||(1145-1202)
[»] scaffold0275 (1 HSPs)
scaffold0275 (378-435)||(2773-2830)


Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-172; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 170 - 598
Target Start/End: Original strand, 47427263 - 47427670
Alignment:
Q  170 aattgtgagatggtttgagagagcttatggaaacaacttatgacatctctataagctatttcaagcnnnnnnnnn-aaactctcaagaatagtttatgaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||    
T  47427263 aattgtgagatggtttgagagagcttatggaaacaacttatgacatctctataagctatttcaagcttatttttttaaactctcaagaatagtttatgaa 47427362  T
Q  269 aatagcttataacttctatgaaaattgttaactttagtttatcttttgttattgaaataattatatataagaacttatatgataagctcgtatcataaaa 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  47427363 aatagcttataacttctatgaaaattgttaactttagtttatcttttgttattgaaataattatatataagaact--tatgataagctcgtatcataaaa 47427460  T
Q  369 gcattcatgtgtataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctattttagaaaat 468  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||||||    
T  47427461 gcattcatgtgtataagttaatcctataacaaaagacaaaataaagtaaaagtattctcatataa--------------------gctattttagaaaat 47427540  T
Q  469 ttgtggaaataagatggaaacatcttatgtagacgtcataaacggtttccgtaaattttgccaaatagtctcacaactcacatgtgtttacttctatagc 568  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47427541 ttgtggaaataagatggaaacatcttatgtagatgtcataaacggtttccgtaaattttgccaaatagtctcacaactcacatgtgtttacttctatagc 47427640  T
Q  569 taagttcaaataaattaatccaaacaaacc 598  Q
    ||||||||||||||||||||||||||||||    
T  47427641 taagttcaaataaattaatccaaacaaacc 47427670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 47428088 - 47428260
Alignment:
Q  1 gttatagcataaactttgtatcacatacacttgagatcgagaagacatgtccggtgtgtgacaccaacacatgcgatcacattttttaaaatgtaatgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47428088 gttatagcataaactttgtatcacatacacttgagatcgagaagacatgtccggtgtgtgacaccaacacatgcgatcacattttttaaaatgtaatgaa 47428187  T
Q  101 atatagagagaagtttataccaagtaggagcgaaaggaagcttgaatcttcgtagcagcttttttcacaaatt 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47428188 atatagagagaagtttataccaagtaggagcgaaaggaagcttgaatctttgtagcagcttttttcacaaatt 47428260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 33645922 - 33645975
Alignment:
Q  172 ttgtgaga-tggtttgagagagcttatggaaacaacttatgacatctctataag 224  Q
    |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||    
T  33645922 ttgtgagactggttggagagagcttatggaaacaacttatgacatgtctataag 33645975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 36598316 - 36598361
Alignment:
Q  170 aattgtgagatggtttgagagagcttatggaaacaacttatgacat 215  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||    
T  36598316 aattgtgagattgtttgagagagcttatggaaacatcttatgacat 36598361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 378 - 457
Target Start/End: Complemental strand, 5006637 - 5006558
Alignment:
Q  378 tgtataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagcta 457  Q
    ||||||||  ||||||||||||||||| |||||||||| ||| | || ||||||||| |||| ||| |||| ||||||||    
T  5006637 tgtataagctattcctataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcataagcta 5006558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 36538016 - 36537973
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacat 215  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  36538016 ttgtgagattgtttgagagaacttatggaaacaacttatgacat 36537973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 27626085 - 27626128
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacat 215  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||    
T  27626085 ttgtgagattgtttgagaaagcttatggaaacagcttatgacat 27626128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 39591463 - 39591514
Alignment:
Q  175 tgagatggtttgagagagcttatggaaacaacttatgacatctctataagct 226  Q
    |||||| ||||||||||||||||||||||| | |||||||| || |||||||    
T  39591463 tgagattgtttgagagagcttatggaaacatcctatgacatatccataagct 39591514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 28520990 - 28521028
Alignment:
Q  188 gagagcttatggaaacaacttatgacatctctataagct 226  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  28520990 gagaacttatggaaacaacttatgacatgtctataagct 28521028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 30134147 - 30134106
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataa 223  Q
    |||||||| |||||||||||||| |||||||||| |||||||    
T  30134147 gtttgagaaagcttatggaaacagcttatgacatgtctataa 30134106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 510
Target Start/End: Complemental strand, 44151592 - 44151476
Alignment:
Q  394 ataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctattttagaaaatttgtggaaataagatggaaacatct 493  Q
    ||||||||||| | |||||||||||| | ||  |||||||||||||  || |||| |||| |||| ||  |||  || |||||||||| || ||||||||    
T  44151592 ataacaaaagatagaataaagtaaaactgtttccatataagctataagttgttttcataaactatcttgaaaagcttatggaaataagctgaaaacatct 44151493  T
Q  494 tatgtagacgtcataaa 510  Q
    |||| | | ||||||||    
T  44151492 tatggacatgtcataaa 44151476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 30987963 - 30988011
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataagctattt 230  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||    
T  30987963 gtttgagagagcttatggaaacaacttatgacatgtccataagctattt 30988011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 27646002 - 27645954
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataagctattt 230  Q
    ||||||||||||||||| | |||||||||||||| ||||||||||||||    
T  27646002 gtttgagagagcttatgcatacaacttatgacatatctataagctattt 27645954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 31875567 - 31875615
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataagctattt 230  Q
    |||||||| ||||||||||||||||||||||||| || |||||| ||||    
T  31875567 gtttgagaaagcttatggaaacaacttatgacatgtccataagccattt 31875615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 43709352 - 43709312
Alignment:
Q  190 gagcttatggaaacaacttatgacatctctataagctattt 230  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  43709352 gagcttatggaaataacttatgacatgtctataagctattt 43709312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 497
Target Start/End: Complemental strand, 28769467 - 28769348
Alignment:
Q  378 tgtataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctattttagaaaatttgtggaaa 477  Q
    ||||||||  ||||||||||||||  | ||||| |||| ||| |||| || |||||||||||   | |||| |||||||||||| || | ||| ||||||    
T  28769467 tgtataagctattcctataacaaactataaaattaagtcaaactattttcttataagctataagctgttttcataagctattttggagagtttatggaaa 28769368  T
Q  478 taagatggaaacatcttatg 497  Q
    |||| || ||||| ||||||    
T  28769367 taagctgaaaacaacttatg 28769348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 37740389 - 37740432
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacat 215  Q
    ||||||||||||| | ||||| ||||||||||||||||||||||    
T  37740389 ttgtgagatggttagggagagtttatggaaacaacttatgacat 37740432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 34563244 - 34563174
Alignment:
Q  285 tatgaaaattgtta-actttagtttatcttttgttattgaaataa-ttatatataagaacttatatgataa 353  Q
    |||||||||||||  |||||| |||||| ||||| || ||||||| ||||||||||| |||||||||||||    
T  34563244 tatgaaaattgtttgactttattttatcctttgtcatagaaataacttatatataagcacttatatgataa 34563174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 40071856 - 40071814
Alignment:
Q  173 tgtgagatggtttgagagagcttatggaaacaacttatgacat 215  Q
    |||||||  ||||| ||||||||||||||||||||||||||||    
T  40071856 tgtgagagtgtttgggagagcttatggaaacaacttatgacat 40071814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 45071466 - 45071428
Alignment:
Q  188 gagagcttatggaaacaacttatgacatctctataagct 226  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  45071466 gagagcttatgaaaacaacttatgacatgtctataagct 45071428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 11415262 - 11415205
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacatctctataagctatt 229  Q
    ||||||||| |||| |||||| ||||||||||| ||||| |||| || ||||||||||    
T  11415262 ttgtgagattgttttagagagtttatggaaacagcttataacatgtccataagctatt 11415205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 14482181 - 14482124
Alignment:
Q  299 actttagtttatcttttgttattgaaata-attatatataagaacttatatgataagc 355  Q
    |||||| ||||||||||||||| ||||||  ||||| ||||| |||||||||||||||    
T  14482181 actttattttatcttttgttatagaaatagtttatacataagcacttatatgataagc 14482124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 26479882 - 26479841
Alignment:
Q  183 tttgagagagcttatggaaacaacttatgacatctctataag 224  Q
    |||| |||||||||||||||||||||||| ||| ||||||||    
T  26479882 tttgcgagagcttatggaaacaacttatgtcatgtctataag 26479841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 30191113 - 30191146
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacat 215  Q
    ||||| ||||||||||||||||||||||||||||    
T  30191113 gtttgggagagcttatggaaacaacttatgacat 30191146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 30259211 - 30259170
Alignment:
Q  183 tttgagagagcttatggaaacaacttatgacatctctataag 224  Q
    |||||||||||||||||||||| ||||||| || ||||||||    
T  30259211 tttgagagagcttatggaaacagcttatgatatgtctataag 30259170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 30600321 - 30600354
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacat 215  Q
    |||||||||||||||||||||||||| |||||||    
T  30600321 gtttgagagagcttatggaaacaactcatgacat 30600354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 35453690 - 35453771
Alignment:
Q  276 tataacttctatgaaaattgtt-aactttagtttatcttttgttattgaaata-attatatataagaacttatatgataagc 355  Q
    |||||||| ||||||| | ||| ||||||| ||||||||||||| | |||| | |||||||||||| |||||||||| ||||    
T  35453690 tataacttatatgaaactagtttaactttattttatcttttgttgtagaaacagattatatataagtacttatatgacaagc 35453771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 40280191 - 40280228
Alignment:
Q  175 tgagatggtttgagagagcttatggaaacaacttatga 212  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  40280191 tgagattgtttgagagagtttatggaaacaacttatga 40280228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 40280296 - 40280353
Alignment:
Q  299 actttagtttatcttttgttattgaaataa-ttatatataagaacttatatgataagc 355  Q
    |||||| ||||||||||||| | ||||||| ||||||||| | |||||||||||||||    
T  40280296 actttattttatcttttgttgtagaaataacttatatataggcacttatatgataagc 40280353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 6509275 - 6509323
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataagctattt 230  Q
    |||||||||||||||| |||||| ||||||||||  |||||| ||||||    
T  6509275 gtttgagagagcttatagaaacagcttatgacatgcctataaactattt 6509323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 6950430 - 6950378
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacatctctataag 224  Q
    ||||||||| ||||| ||||||||||| ||||||| |||||||| || |||||    
T  6950430 ttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataag 6950378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 30918221 - 30918177
Alignment:
Q  171 attgtgagatggtttgagagagcttatggaaacaacttatgacat 215  Q
    |||||||||  ||||||||||||||||| ||||||||| ||||||    
T  30918221 attgtgagactgtttgagagagcttatgaaaacaacttgtgacat 30918177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 35869860 - 35869760
Alignment:
Q  256 aatagtttatgaaaatagcttataacttctatgaaaattgtta-actttagtttatcttttgttattgaaataa-ttatatataagaacttatatgataa 353  Q
    ||||| ||||||||| | |||||| ||| |||||||||||||  | |||| ||||| ||||||| | |||||   ||||| |||||||||||||||||||    
T  35869860 aatagcttatgaaaacaacttatagcttatatgaaaattgtttgaatttattttatattttgttgtagaaatcgcttatacataagaacttatatgataa 35869761  T
Q  354 g 354  Q
    |    
T  35869760 g 35869760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 392 - 458
Target Start/End: Original strand, 1402952 - 1403018
Alignment:
Q  392 ctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctat 458  Q
    ||||||||||||| |||||||||| ||| |||| |||||||||||||| ||| |||| |||||||||    
T  1402952 ctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataagctat 1403018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 2460113 - 2460165
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacatctctataag 224  Q
    ||||||||  |||||||||||||||||||||||||||||||||| ||| ||||    
T  2460113 ttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaag 2460165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 32917305 - 32917251
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacatctctataagct 226  Q
    ||||||||  ||||| |||||||||||||||||||||||||||| || |||||||    
T  32917305 ttgtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagct 32917251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 4248937 - 4248880
Alignment:
Q  299 actttagtttatcttttgttattgaaata-attatatataagaacttatatgataagc 355  Q
    |||||| ||||||||||||||||||||||  ||||||||||| |||||||||| ||||    
T  4248937 actttattttatcttttgttattgaaatagcttatatataagcacttatatgacaagc 4248880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 27857456 - 27857412
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataagct 226  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||||    
T  27857456 gtttgggagagcttatgaaaacaacttatgacatctccataagct 27857412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 34939611 - 34939579
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgaca 214  Q
    |||||||||||||||||||||||||||||||||    
T  34939611 gtttgagagagcttatggaaacaacttatgaca 34939579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 1669776 - 1669814
Alignment:
Q  188 gagagcttatggaaacaacttatgacatctctataagct 226  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  1669776 gagagcttatgaaaacaacttatgacatgtctataagct 1669814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 6310228 - 6310266
Alignment:
Q  188 gagagcttatggaaacaacttatgacatctctataagct 226  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  6310228 gagagcttatgaaaacaacttatgacatgtctataagct 6310266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 24782299 - 24782257
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgaca 214  Q
    |||||| || |||||||||||||||| ||||||||||||||||    
T  24782299 ttgtgaaattgtttgagagagcttatagaaacaacttatgaca 24782257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 353
Target Start/End: Original strand, 10749316 - 10749373
Alignment:
Q  296 ttaactttagtttatcttttgttattgaaataattatatataagaacttatatgataa 353  Q
    ||||||||| |||||||||| |||| |||||| ||||| |||| | ||||||||||||    
T  10749316 ttaactttattttatcttttattatagaaatacttatacataacatcttatatgataa 10749373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 31594356 - 31594389
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacat 215  Q
    ||||||||||| ||||||||||||||||||||||    
T  31594356 gtttgagagaggttatggaaacaacttatgacat 31594389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 32577958 - 32577991
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacat 215  Q
    ||||||||||||||||| ||||||||||||||||    
T  32577958 gtttgagagagcttatgaaaacaacttatgacat 32577991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 281810 - 281862
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacatctctataag 224  Q
    ||||||||  ||||| ||||||| |||||| ||||||||||||| ||||||||    
T  281810 ttgtgagactgtttgggagagctaatggaagcaacttatgacatgtctataag 281862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 10616514 - 10616546
Alignment:
Q  183 tttgagagagcttatggaaacaacttatgacat 215  Q
    |||| ||||||||||||||||||||||||||||    
T  10616514 tttgggagagcttatggaaacaacttatgacat 10616546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 20377898 - 20377934
Alignment:
Q  188 gagagcttatggaaacaacttatgacatctctataag 224  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  20377898 gagagcttatgaaaacaacttatgacatgtctataag 20377934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 24782090 - 24782046
Alignment:
Q  248 ctctcaagaatagtttatgaaaatagcttataacttctatgaaaa 292  Q
    |||||||| ||||||||| ||| ||||||||||||| ||||||||    
T  24782090 ctctcaaggatagtttattaaagtagcttataacttatatgaaaa 24782046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 34404637 - 34404605
Alignment:
Q  183 tttgagagagcttatggaaacaacttatgacat 215  Q
    |||| ||||||||||||||||||||||||||||    
T  34404637 tttgggagagcttatggaaacaacttatgacat 34404605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 32172761 - 32172703
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacatctctataagctattt 230  Q
    ||||||||| ||||| |||||||||||||||||||||||||||| || |||||| ||||    
T  32172761 ttgtgagatagtttgggagagcttatggaaacaacttatgacatgtccataagccattt 32172703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 256 - 351
Target Start/End: Original strand, 18704083 - 18704179
Alignment:
Q  256 aatagtttatgaaaatagcttataacttctatgaaaattg-ttaactttagtttatcttttgttattgaaataa-ttatatataagaacttatatgat 351  Q
    ||||| ||||||||| | |||||| ||| ||| ||||| | || |||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||    
T  18704083 aatagcttatgaaaacaacttatagcttatataaaaatagcttgacttta-tttatcttttgttatagaaataacttatacataagaacttatatgat 18704179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 35135790 - 35135729
Alignment:
Q  378 tgtataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctata 439  Q
    ||||||||  ||| ||||||||||||| |||||||||| ||| |||| ||||||||||||||    
T  35135790 tgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctata 35135729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 38047851 - 38047895
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataagct 226  Q
    ||||| |||||||||||||||||||||||||||| || |||||||    
T  38047851 gtttgggagagcttatggaaacaacttatgacatgtccataagct 38047895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 456
Target Start/End: Original strand, 39128595 - 39128659
Alignment:
Q  392 ctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagct 456  Q
    ||||||||||||| |||||||||| ||| | |||||| |||| ||||| | ||||||||||||||    
T  39128595 ctataacaaaagataaaataaagtcaaattgttctcaaataaactataaactatttttataagct 39128659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 11457189 - 11457146
Alignment:
Q  189 agagcttatggaaacaacttatgacatctctataagctatttca 232  Q
    ||||||||||||||||||||||||||| || ||||||| |||||    
T  11457189 agagcttatggaaacaacttatgacatgtccataagctgtttca 11457146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 12242672 - 12242715
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacat 215  Q
    |||||||||  |||||||||||||||||||| ||||||||||||    
T  12242672 ttgtgagattatttgagagagcttatggaaaaaacttatgacat 12242715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 16889769 - 16889686
Alignment:
Q  245 aaactctcaagaatagtttatgaaaatagcttataacttctatgaaaattgtta-actttagtttatcttttgttattgaaata 327  Q
    |||||||| || |||| ||||||||| |||||||| ||||||| ||||  |||  |||| ||||||||||||||||| ||||||    
T  16889769 aaactctctagcatagcttatgaaaacagcttatagcttctataaaaacagtttgacttaagtttatcttttgttatggaaata 16889686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 18700475 - 18700440
Alignment:
Q  189 agagcttatggaaacaacttatgacatctctataag 224  Q
    ||||||||||||||||||||||||||| ||||||||    
T  18700475 agagcttatggaaacaacttatgacatgtctataag 18700440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 37611177 - 37611220
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacat 215  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||||    
T  37611177 ttgtgagattgtttgagagagcttatgaaaacaacttgtgacat 37611220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 37787907 - 37787950
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacat 215  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||||    
T  37787907 ttgtgagattgtttgagagagcttatgaaaacaacttgtgacat 37787950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 40499704 - 40499742
Alignment:
Q  188 gagagcttatggaaacaacttatgacatctctataagct 226  Q
    |||||||||||||||||||||||||||| || |||||||    
T  40499704 gagagcttatggaaacaacttatgacatgtccataagct 40499742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 415
Target Start/End: Complemental strand, 33459063 - 33459026
Alignment:
Q  378 tgtataagtgattcctataacaaaagacaaaataaagt 415  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  33459063 tgtataagttatttctataacaaaagacaaaataaagt 33459026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 35095874 - 35095931
Alignment:
Q  299 actttagtttatcttttgttattgaaata-attatatataagaacttatatgataagc 355  Q
    |||||| ||||||||||||||| ||||||  ||| ||||||| |||||||||||||||    
T  35095874 actttattttatcttttgttatagaaatagtttaaatataagcacttatatgataagc 35095931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 454
Target Start/End: Complemental strand, 8158409 - 8158353
Alignment:
Q  398 caaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataag 454  Q
    ||||||| |||||||||| ||| |||| ||||||||||| || |||||||| |||||    
T  8158409 caaaagataaaataaagttaaattattttcatataagctttaaattattttcataag 8158353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 11297168 - 11297216
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataagctattt 230  Q
    |||||| ||||||||||||||||||||| ||||| || || ||||||||    
T  11297168 gtttgaaagagcttatggaaacaacttaagacatgtcaattagctattt 11297216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 25182949 - 25183007
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacatctctataagctattt 230  Q
    ||||||||  ||||||||||||||||| |||||||||||||||| || |||||||||||    
T  25182949 ttgtgagactgtttgagagagcttatgaaaacaacttatgacatatccataagctattt 25183007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 31403116 - 31403063
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataagctatttcaagc 235  Q
    ||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||    
T  31403116 gtttgagagagcttatggaaacaacttattacatgtctataaggtattttaagc 31403063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 461
Target Start/End: Complemental strand, 37689497 - 37689429
Alignment:
Q  393 tataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctatttt 461  Q
    |||||||||||| ||| |||||| ||| |||| |||||||||||||| | |||||| ||||||||||||    
T  37689497 tataacaaaagataaagtaaagttaaattattttcatataagctataaactattttcataagctatttt 37689429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 16790181 - 16790234
Alignment:
Q  301 tttagtttatcttttgttattgaaataa-ttatatataagaacttatatgataa 353  Q
    |||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||    
T  16790181 tttattttatcttttgttatagaaataacttatatataagcacttatatgataa 16790234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 1395613 - 1395673
Alignment:
Q  378 tgtataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctat 438  Q
    ||||||||  ||| ||||||||||||| |||||||||| ||| |||| |||||||||||||    
T  1395613 tgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagctat 1395673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 24281155 - 24281103
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacatctctataag 224  Q
    ||||| ||| ||||||||||||||||| ||||||||||||| ||||| |||||    
T  24281155 ttgtgtgattgtttgagagagcttatgaaaacaacttatgatatctccataag 24281103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 2321286 - 2321243
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacat 215  Q
    ||||||||| ||||||||||| ||||||||||||||||| ||||    
T  2321286 ttgtgagattgtttgagagagtttatggaaacaacttattacat 2321243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 458
Target Start/End: Complemental strand, 24235813 - 24235731
Alignment:
Q  376 tgtgtataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctat 458  Q
    ||||||||||| ||| ||||||||||||| || ||||||| ||| ||||   ||||||||||||  || |||| |||||||||    
T  24235813 tgtgtataagttatttctataacaaaagataatataaagtcaaactatttgaatataagctataagttgttttcataagctat 24235731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 439
Target Start/End: Original strand, 29771750 - 29771812
Alignment:
Q  377 gtgtataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctata 439  Q
    |||||||||| ||| ||||| ||||||||||| |||||| ||| |||| |||||||| |||||    
T  29771750 gtgtataagttatttctataccaaaagacaaagtaaagtgaaattattttcatataaactata 29771812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 37273232 - 37273190
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataag 224  Q
    ||||| |||||||||||||||||||||||||||| || |||||    
T  37273232 gtttgggagagcttatggaaacaacttatgacatgtccataag 37273190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 2606282 - 2606315
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacat 215  Q
    |||||||||| |||||||||||||||||||||||    
T  2606282 gtttgagagatcttatggaaacaacttatgacat 2606315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 497
Target Start/End: Complemental strand, 36646496 - 36646391
Alignment:
Q  392 ctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctattttagaaaatttgtggaaataagatggaaacat 491  Q
    |||| |||||||| ||||||||||| || | || ||||||||| ||||  || |||| |||||||||  |||| | ||| | ||||||||||| |||||     
T  36646496 ctatgacaaaagataaaataaagtataattgttttcatataagttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaacag 36646397  T
Q  492 cttatg 497  Q
    ||||||    
T  36646396 cttatg 36646391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 37689431 - 37689496
Alignment:
Q  256 aatagtttatgaaaatagcttataacttctatgaaaat-tgttaactttagtttatcttttgttat 320  Q
    ||||| |||||||||||| ||||| ||| |||||||||   ||||||||| |||||||||||||||    
T  37689431 aatagcttatgaaaatagtttatagcttatatgaaaataatttaactttactttatcttttgttat 37689496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 40880920 - 40880953
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacat 215  Q
    ||||||||||||||||| ||||||||||||||||    
T  40880920 gtttgagagagcttatgaaaacaacttatgacat 40880953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 49845513 - 49845554
Alignment:
Q  183 tttgagagagcttatggaaacaacttatgacatctctataag 224  Q
    |||| |||||||||||||||||||||||||| | ||||||||    
T  49845513 tttgggagagcttatggaaacaacttatgacgtttctataag 49845554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 1810074 - 1810042
Alignment:
Q  183 tttgagagagcttatggaaacaacttatgacat 215  Q
    |||||||||||||| ||||||||||||||||||    
T  1810074 tttgagagagcttacggaaacaacttatgacat 1810042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 29113560 - 29113512
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataagctattt 230  Q
    |||||||||||||||  |||||||||||| ||||  |||||||||||||    
T  29113560 gtttgagagagcttacagaaacaacttataacatgcctataagctattt 29113512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 49605813 - 49605861
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacatctcta 220  Q
    ||||||||  ||||||||||| | |||||||||||||||||||| ||||    
T  49605813 ttgtgagagtgtttgagagagttcatggaaacaacttatgacatgtcta 49605861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 53735937 - 53735977
Alignment:
Q  175 tgagatggtttgagagagcttatggaaacaacttatgacat 215  Q
    |||||| |||||||||| ||||| |||||||||||||||||    
T  53735937 tgagattgtttgagagaacttattgaaacaacttatgacat 53735977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 28803597 - 28803654
Alignment:
Q  299 actttagtttatcttttgttattgaaataa-ttatatataagaacttatatgataagc 355  Q
    |||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  28803597 actttattttatcttttgttatcgaaataacttatatataagcacttatatgataagc 28803654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 6561428 - 6561391
Alignment:
Q  189 agagcttatggaaacaacttatgacatctctataagct 226  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  6561428 agagcttatggaaacaacttatgacatatctataagct 6561391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 393 - 458
Target Start/End: Complemental strand, 18962151 - 18962086
Alignment:
Q  393 tataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctat 458  Q
    |||||||||||| |||||||||| ||| | || |||||||||||||| | |||||| |||||||||    
T  18962151 tataacaaaagataaaataaagttaaactgttttcatataagctataaactattttcataagctat 18962086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 4550845 - 4550797
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataagctattt 230  Q
    ||||| |||||||||||||||||||||||||||| |  |||||||||||    
T  4550845 gtttgggagagcttatggaaacaacttatgacatgttcataagctattt 4550797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 354
Target Start/End: Original strand, 17952749 - 17952848
Alignment:
Q  257 atagtttatgaaaatagcttataacttctatgaaaattgtta-actttagtttatcttttgttattgaaata-attatatataagaacttatatgataag 354  Q
    |||| ||||||||| | ||| || ||| ||||||||| |||  |||||| ||||||||||||||| ||||||  |||||||||||  |||||||||||||    
T  17952749 atagcttatgaaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgataag 17952848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 14316123 - 14316161
Alignment:
Q  188 gagagcttatggaaacaacttatgacatctctataagct 226  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  14316123 gagagcttatggaaacaacttatgacatatgtataagct 14316161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 34651998 - 34652052
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacatctctataagct 226  Q
    |||||||| |||| |||| ||||||| ||||||||||||||||| || |||||||    
T  34651998 ttgtgagacggttggagaaagcttatagaaacaacttatgacatgtccataagct 34652052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 438
Target Start/End: Complemental strand, 37292457 - 37292415
Alignment:
Q  396 aacaaaagacaaaataaagtaaaagtattctcatataagctat 438  Q
    ||||||||| |||||||||||||| |||| |||||||||||||    
T  37292457 aacaaaagataaaataaagtaaaactattttcatataagctat 37292415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 1742005 - 1742050
Alignment:
Q  183 tttgagagagcttatggaaacaacttatgacatctctataagctat 228  Q
    |||| |||||||||||||||||||||||||||| |  |||||||||    
T  1742005 tttgggagagcttatggaaacaacttatgacatgtgcataagctat 1742050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 15120281 - 15120248
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacat 215  Q
    ||||| ||||||||||||||||||||||||||||    
T  15120281 gtttgggagagcttatggaaacaacttatgacat 15120248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 17952815 - 17952770
Alignment:
Q  392 ctataacaaaagacaaaataaagtaaaagtattctcatataagcta 437  Q
    ||||||||||||| |||||||||| ||| |||| ||||||||||||    
T  17952815 ctataacaaaagataaaataaagtcaaactattttcatataagcta 17952770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 28803493 - 28803546
Alignment:
Q  173 tgtgagatggtttgagagagcttatggaaacaacttatgacatctctataagct 226  Q
    |||||||  |||||||||| | ||||||||||||||||||||| || |||||||    
T  28803493 tgtgagactgtttgagagaacatatggaaacaacttatgacatgtccataagct 28803546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 43431535 - 43431592
Alignment:
Q  299 actttagtttatcttttgttattgaaataa-ttatatataagaacttatatgataagc 355  Q
    |||||| ||||||||||||||||||||||| ||||| || |  |||||||||||||||    
T  43431535 actttactttatcttttgttattgaaataacttatacattaacacttatatgataagc 43431592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 458
Target Start/End: Original strand, 10143114 - 10143194
Alignment:
Q  378 tgtataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctat 458  Q
    ||||||||| ||| ||||||||||||| ||||| |||| ||| | || | ||||||||||||  || |||| |||||||||    
T  10143114 tgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcataagctat 10143194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 18962086 - 18962150
Alignment:
Q  257 atagtttatgaaaatagcttataacttctatgaaaattgtt-aactttagtttatcttttgttat 320  Q
    |||| |||||||||||| ||||| ||| ||||||||  ||| ||||||| |||||||||||||||    
T  18962086 atagcttatgaaaatagtttatagcttatatgaaaacagtttaactttattttatcttttgttat 18962150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 27699491 - 27699535
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacatc 216  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||    
T  27699491 ttgtgagactgtttgagagagtttatgaaaacaacttatgacatc 27699535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 31461394 - 31461442
Alignment:
Q  392 ctataacaaaagacaaaataaagtaaaagtattctcatataagctatag 440  Q
    ||||||||||||| |||||||||| ||| ||||||| | ||||||||||    
T  31461394 ctataacaaaagataaaataaagtcaaattattctcctgtaagctatag 31461442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 27123314 - 27123366
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacatctctataag 224  Q
    ||||||||  |||||||||||||||||||||||||||||||||| ||| ||||    
T  27123314 ttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaag 27123366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 49893414 - 49893366
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataagctattt 230  Q
    ||||||| ||||||||||||||| |||||||||||||| ||||||||||    
T  49893414 gtttgagggagcttatggaaacagcttatgacatctctgtaagctattt 49893366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 439
Target Start/End: Original strand, 30024645 - 30024703
Alignment:
Q  381 ataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctata 439  Q
    |||||| ||| ||||||||||||| |||||||||||||| | || ||||||||||||||    
T  30024645 ataagttatttctataacaaaagataaaataaagtaaaattgttttcatataagctata 30024703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 497
Target Start/End: Original strand, 49219082 - 49219200
Alignment:
Q  379 gtataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctattttagaaaatttgtggaaat 478  Q
    |||||||| ||| ||||||||||| | |||||||||| ||| |||| ||||||||||||||  || |||| |||| |||| ||| | |  || |||||||    
T  49219082 gtataagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcataaactatcttaaagagattatggaaat 49219181  T
Q  479 aagatggaaacatcttatg 497  Q
    ||| || ||||| ||||||    
T  49219182 aagctgaaaacaacttatg 49219200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 2996671 - 2996627
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataagct 226  Q
    ||||||||||||||||| |||||||||||||||| || |||||||    
T  2996671 gtttgagagagcttatgaaaacaacttatgacatgtccataagct 2996627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 27725312 - 27725264
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataagctattt 230  Q
    ||||||||||||||||||||| |||||||||||| || |||| ||||||    
T  27725312 gtttgagagagcttatggaaataacttatgacatgtccataaactattt 27725264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 439
Target Start/End: Original strand, 4071838 - 4071885
Alignment:
Q  392 ctataacaaaagacaaaataaagtaaaagtattctcatataagctata 439  Q
    ||||||||||||| |||||||||| ||| |||| ||||||||||||||    
T  4071838 ctataacaaaagataaaataaagtcaaattattttcatataagctata 4071885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 4071861 - 4071811
Alignment:
Q  299 actttagtttatcttttgttattgaaataattatatataagaacttatatg 349  Q
    |||||| ||||||||||||||| |||||| ||||||||||  |||||||||    
T  4071861 actttattttatcttttgttatagaaatagttatatataaacacttatatg 4071811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 6987703 - 6987761
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacatctctataagctattt 230  Q
    ||||||||  ||||| ||||||||||||| |||||||||||||| || |||| ||||||    
T  6987703 ttgtgagactgtttgggagagcttatggatacaacttatgacatgtccataaactattt 6987761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 35900305 - 35900363
Alignment:
Q  262 ttatgaaaatagcttataacttctatgaaaattg-ttaactttagtttatcttttgtta 319  Q
    ||||||||||| |||||| || |||||||||| | ||||||||| ||||||||||||||    
T  35900305 ttatgaaaataacttatagctcctatgaaaatggattaactttaatttatcttttgtta 35900363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 46175658 - 46175692
Alignment:
Q  191 agcttatggaaacaacttatgacatctctataagc 225  Q
    |||||||||||||||||||||||||||| ||||||    
T  46175658 agcttatggaaacaacttatgacatctccataagc 46175692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 47800612 - 47800574
Alignment:
Q  296 ttaactttagtttatcttttgttattgaaataattatat 334  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  47800612 ttaactttattttatcttttgttatagaaataattatat 47800574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 50799992 - 50800046
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacatctctataagct 226  Q
    ||||||||| ||||| |||| || ||| |||||||||||||||| ||||||||||    
T  50799992 ttgtgagattgtttgggagaactaatgtaaacaacttatgacatgtctataagct 50800046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 23676794 - 23676753
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataa 223  Q
    |||||||| ||||||||||||||||||||| ||| |||||||    
T  23676794 gtttgagatagcttatggaaacaacttatggcatatctataa 23676753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 24929513 - 24929444
Alignment:
Q  259 agtttatgaaaatagcttataacttctatgaaaattgtta-actttagtttatcttttgttattgaaata 327  Q
    |||||||||||| | |||||| ||| ||||||||  |||| |||||| ||||||||||||||| ||||||    
T  24929513 agtttatgaaaacaacttatagcttttatgaaaacagttagactttattttatcttttgttatagaaata 24929444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 453
Target Start/End: Complemental strand, 45128424 - 45128363
Alignment:
Q  392 ctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataa 453  Q
    ||||||||||||| ||||| || | ||| ||||||||||||||||||| ||| |||| ||||    
T  45128424 ctataacaaaagataaaatcaaatcaaattattctcatataagctataaattgttttcataa 45128363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 53155358 - 53155317
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataa 223  Q
    ||||| ||||||||||| |||||||||||||||| |||||||    
T  53155358 gtttgtgagagcttatgcaaacaacttatgacatgtctataa 53155317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 5219548 - 5219612
Alignment:
Q  257 atagtttatgaaaatagcttataacttctatgaaaattg-ttaactttagtttatcttttgttat 320  Q
    ||||||| |||||||||||||| | || ||||||||| | ||||||||| |||||||||| ||||    
T  5219548 atagtttgtgaaaatagcttattatttatatgaaaatagtttaactttattttatcttttattat 5219612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 6428126 - 6428074
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacatctctataag 224  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||| || |||||    
T  6428126 ttgtgagacagtttgagagagattatgaaaacaacttatgacatgtccataag 6428074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 7749064 - 7749096
Alignment:
Q  183 tttgagagagcttatggaaacaacttatgacat 215  Q
    |||| ||||||||||||||||||||||||||||    
T  7749064 tttgtgagagcttatggaaacaacttatgacat 7749096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 24444061 - 24443961
Alignment:
Q  256 aatagtttatgaaaatagcttataacttctatgaaaattgtta-actttagtttatcttttgttattgaaataa-ttatatataagaacttatatgataa 353  Q
    ||||| ||||||||| | |||||| ||| |||||||||||||  | |||| ||||| ||||||| | |||||   ||||| |||||||||||||||||||    
T  24444061 aatagcttatgaaaacaacttatagcttatatgaaaattgtttgaatttattttatattttgttgtagaaatcgcttatacataagaacttatatgataa 24443962  T
Q  354 g 354  Q
    |    
T  24443961 g 24443961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 262 - 355
Target Start/End: Complemental strand, 52286695 - 52286600
Alignment:
Q  262 ttatgaaaatagcttataacttctatgaaaattg-ttaactttagtttatcttttgttattgaaata-attatatataagaacttatatgataagc 355  Q
    |||||||||||| ||||| ||| ||||||||||| ||||||||| ||||||||||||| | ||||||  ||||  |||||  ||||||||||||||    
T  52286695 ttatgaaaatagtttatagcttatatgaaaattgtttaactttattttatcttttgttgtagaaatatcttattcataagcgcttatatgataagc 52286600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 15581362 - 15581308
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacatctctataagct 226  Q
    ||||||||| |||||  |||||| |||||||||||||||||||| ||||||||||    
T  15581362 ttgtgagattgtttggaagagctaatggaaacaacttatgacatgtctataagct 15581308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 17631079 - 17631120
Alignment:
Q  187 agagagcttatggaaacaacttatgacatctctataagctat 228  Q
    ||||||||||||||||||||||||||||| || |||||||||    
T  17631079 agagagcttatggaaacaacttatgacatgtccataagctat 17631120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 459
Target Start/End: Complemental strand, 48830204 - 48830123
Alignment:
Q  378 tgtataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctatagattatttttataagctatt 459  Q
    ||||||||| ||| |||| || ||||| |||||||||| ||| |||| |||||||||||||| | | |||| ||||||||||    
T  48830204 tgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagctataaactgttttcataagctatt 48830123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 49521770 - 49521810
Alignment:
Q  175 tgagatggtttgagagagcttatggaaacaacttatgacat 215  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  49521770 tgagattgtttgagagagcttgtggaaacaacttatgacat 49521810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 4363596 - 4363639
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacat 215  Q
    ||||||||| ||||||||| |||||| |||||||||||||||||    
T  4363596 ttgtgagattgtttgagagcgcttatcgaaacaacttatgacat 4363639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 11560535 - 11560582
Alignment:
Q  183 tttgagagagcttatggaaacaacttatgacatctctataagctattt 230  Q
    ||||| ||||||||||||||||||||||||||| || |||| ||||||    
T  11560535 tttgatagagcttatggaaacaacttatgacatatccataaactattt 11560582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 16982027 - 16982086
Alignment:
Q  299 actttagtttatcttttgttattgaaataa-ttatatataagaacttatatgataagctc 357  Q
    |||||| ||||||||||||||| ||||||| ||||| ||||  |||||||||||||||||    
T  16982027 actttattttatcttttgttatcgaaataagttatacataaacacttatatgataagctc 16982086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 23373275 - 23373318
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgacat 215  Q
    ||||||||| ||||| |||||||||| |||||||||||||||||    
T  23373275 ttgtgagattgtttgggagagcttatagaaacaacttatgacat 23373318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 37175903 - 37175942
Alignment:
Q  189 agagcttatggaaacaacttatgacatctctataagctat 228  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  37175903 agagcttatggaaacaacttatgacatatttataagctat 37175942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 439
Target Start/End: Original strand, 49517010 - 49517073
Alignment:
Q  376 tgtgtataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctata 439  Q
    ||||||||||| ||| ||||||||||||| |||||||||| ||| | || |||| |||||||||    
T  49517010 tgtgtataagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctata 49517073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 36641854 - 36641800
Alignment:
Q  299 actttagtttatcttttgttattgaaataa-ttatatataagaacttatatgata 352  Q
    |||||| ||||||||||||||| ||||||| ||||||||||| | ||||||||||    
T  36641854 actttattttatcttttgttatagaaataacttatatataagtaattatatgata 36641800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 4033979 - 4034020
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatgac 213  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||    
T  4033979 ttgtgagattgtttgagagagcttatgaaaataacttatgac 4034020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 4549513 - 4549554
Alignment:
Q  182 gtttgagagagcttatggaaacaacttatgacatctctataa 223  Q
    ||||| |||||||||| ||||||||||||||||| |||||||    
T  4549513 gtttgggagagcttatagaaacaacttatgacatgtctataa 4549554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 15360836 - 15360897
Alignment:
Q  378 tgtataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctata 439  Q
    ||||| ||| ||| ||||||||||||| |||||||||| ||| | || ||||||||||||||    
T  15360836 tgtattagttatttctataacaaaagataaaataaagtcaaactgttttcatataagctata 15360897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 439
Target Start/End: Complemental strand, 29007840 - 29007783
Alignment:
Q  382 taagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctata 439  Q
    ||||| ||| ||||||||||||| ||| |||||| ||| |||| ||||||||||||||    
T  29007840 taagttatttctataacaaaagaaaaattaaagtcaaactattttcatataagctata 29007783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 15361747 - 15361699
Alignment:
Q  245 aaactctcaagaatagtttatgaaaatagcttataacttctatgaaaat 293  Q
    |||||||||||||||  ||||||||| |||||||| ||| |||||||||    
T  15361747 aaactctcaagaatatcttatgaaaacagcttatagcttatatgaaaat 15361699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 16980900 - 16980868
Alignment:
Q  183 tttgagagagcttatggaaacaacttatgacat 215  Q
    ||||||||||||||||||||||||||| |||||    
T  16980900 tttgagagagcttatggaaacaacttacgacat 16980868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 17628689 - 17628653
Alignment:
Q  190 gagcttatggaaacaacttatgacatctctataagct 226  Q
    |||||||||||||||||||||||||| || |||||||    
T  17628689 gagcttatggaaacaacttatgacatgtccataagct 17628653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 28467420 - 28467376
Alignment:
Q  393 tataacaaaagacaaaataaagtaaaagtattctcatataagcta 437  Q
    |||||||||||| |||||||||| ||| |||| ||||||||||||    
T  28467420 tataacaaaagataaaataaagtcaaattattttcatataagcta 28467376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 37272556 - 37272596
Alignment:
Q  172 ttgtgagatggtttgagagagcttatggaaacaacttatga 212  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  37272556 ttgtgagattgtttgagagagcttatggagacagcttatga 37272596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 439
Target Start/End: Complemental strand, 44936713 - 44936657
Alignment:
Q  383 aagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagctata 439  Q
    |||| ||| ||||||||||||| || ||||||| ||| |||| ||||||||||||||    
T  44936713 aagttatttctataacaaaagataagataaagtcaaactattttcatataagctata 44936657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 1202 - 1145
Alignment:
Q  378 tgtataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagc 435  Q
    ||||||||  ||| ||||||||||||| |||||||||| ||| |||||||||||||||    
T  1202 tgtataagctatttctataacaaaagataaaataaagtcaaactattctcatataagc 1145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 2773 - 2830
Alignment:
Q  378 tgtataagtgattcctataacaaaagacaaaataaagtaaaagtattctcatataagc 435  Q
    ||||||||  ||| ||||||||||||| |||||||||| ||| |||||||||||||||    
T  2773 tgtataagctatttctataacaaaagataaaataaagtcaaactattctcatataagc 2830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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