View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0245_low_1 (Length: 560)
Name: NF0245_low_1
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0245_low_1 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Complemental strand, 51912877 - 51912321
Alignment:
| Q |
1 |
caattattactaattaccggttatttccaaatgtcttattccaaacgttattgagcttgaatgaccactaattggtgtaccgaatgaagagtcatttccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51912877 |
caattattactaattaccggttatttccaaatgtcttattccaaacgttattgagcttgaatgaccactaattggtgtaccgaatgaagagtcatttccc |
51912778 |
T |
|
| Q |
101 |
gtgtgtcctgcctgtgctctgtgctctgtgtgtgtcagttatgcagaaagnnnnnnnnnnggcagctcacactcactcacacccctcacttattttcctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51912777 |
gtgtgtcctgcctgtgctctgtgctctgtgtgtgtcagttatgcagaaa---aaaaaaaaggcagctcacactcactcacacccctcacttattttcctg |
51912681 |
T |
|
| Q |
201 |
ccgtgcacccaatttgattatttcatcgatcatcaaatttcatgtaggaccactaagattgaaaacttgaggtgaaaataattaataagacaaaaaacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51912680 |
ccgtgcacccaatttgattatttcatcgatcatcaaatttcatgtaggaccactaagattgaaaacttgaggtgaaaataattaataagacaaaaaacaa |
51912581 |
T |
|
| Q |
301 |
gacacnnnnnnnnnnnnnnnnnnggcagataaaaacactattcttatcatgattttaggaaactagcagaactcacgatctgtcatacaactcaacagcc |
400 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51912580 |
gacacttttttcttttctcttttggcagataaaaacactattcttatcatgattttaggaaactagcagaactcacgatctgtcatacaactcaacagcc |
51912481 |
T |
|
| Q |
401 |
tttagcaatcaaagtctgtgaaatcaaacactaaaagcaaggtgattcaagcacctaatattggacaatgcacacaacaaaggatgaaatggaacttatc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51912480 |
tttagcaatcaaagtctgtgaaatcaaacactaaaagcaaggtgattcaagcacctaatattggacaatgcacacaacaaaggatgaaatggaacttatc |
51912381 |
T |
|
| Q |
501 |
atacccaaaattacaacttccaaaccgagctattacatttgcttcaagtattcactatcc |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51912380 |
atacccaaaattacaacttccaaaccgagctattacatttgcttcaagtattcactatcc |
51912321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 488 - 545
Target Start/End: Complemental strand, 5692942 - 5692885
Alignment:
| Q |
488 |
aatggaacttatcatacccaaaattacaacttccaaaccgagctattacatttgcttc |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| |||||||| |||||||||| |
|
|
| T |
5692942 |
aatggaacttatcatacccaaaattacaacctagaaaaggagctatttcatttgcttc |
5692885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 459
Target Start/End: Complemental strand, 5963685 - 5963627
Alignment:
| Q |
401 |
tttagcaatcaaagtctgtgaaatcaaacactaaaagcaaggtgattcaagcacctaat |
459 |
Q |
| |
|
||||| |||| |||| | ||||||||||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
5963685 |
tttagaaatcgaagtatatgaaatcaaacactaaaagaaaggtgattgaagcatctaat |
5963627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1894 times since January 2019
Visitors: 2394