View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0245_low_4 (Length: 278)

Name: NF0245_low_4
Description: NF0245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0245_low_4
NF0245_low_4
[»] chr8 (9 HSPs)
chr8 (1-242)||(14892544-14892785)
chr8 (1-241)||(21211762-21212002)
chr8 (1-168)||(22832121-22832288)
chr8 (77-149)||(18233759-18233831)
chr8 (77-149)||(18243210-18243282)
chr8 (79-149)||(12916388-12916458)
chr8 (79-149)||(25036218-25036288)
chr8 (79-149)||(25050255-25050325)
chr8 (77-149)||(33600768-33600840)
[»] scaffold0058 (1 HSPs)
scaffold0058 (1-241)||(53322-53562)
[»] chr6 (7 HSPs)
chr6 (1-241)||(29541756-29541996)
chr6 (1-241)||(18161374-18161614)
chr6 (1-241)||(16899255-16899495)
chr6 (1-241)||(31358870-31359110)
chr6 (1-239)||(34766667-34766905)
chr6 (1-239)||(18704835-18705073)
chr6 (1-239)||(18710770-18711008)
[»] chr4 (7 HSPs)
chr4 (1-239)||(17150684-17150922)
chr4 (1-239)||(520705-520943)
chr4 (1-240)||(16254548-16254782)
chr4 (1-241)||(6693527-6693767)
chr4 (1-239)||(7845250-7845488)
chr4 (78-148)||(54698640-54698710)
chr4 (78-140)||(26813342-26813404)
[»] chr7 (15 HSPs)
chr7 (1-241)||(9544032-9544272)
chr7 (1-241)||(16140976-16141216)
chr7 (1-241)||(5389963-5390203)
chr7 (1-241)||(26304865-26305105)
chr7 (1-241)||(26361713-26361953)
chr7 (1-241)||(32099689-32099929)
chr7 (1-241)||(46498423-46498663)
chr7 (1-241)||(8502358-8502598)
chr7 (1-241)||(44898608-44898848)
chr7 (1-241)||(6535793-6536033)
chr7 (1-195)||(13284221-13284416)
chr7 (79-239)||(42596698-42596858)
chr7 (78-148)||(7582477-7582547)
chr7 (78-148)||(15175386-15175456)
chr7 (1-43)||(42596865-42596907)
[»] chr5 (14 HSPs)
chr5 (1-241)||(18362586-18362826)
chr5 (1-241)||(26201117-26201357)
chr5 (1-241)||(27413457-27413697)
chr5 (1-239)||(20949166-20949404)
chr5 (1-241)||(33940629-33940869)
chr5 (3-239)||(23375691-23375927)
chr5 (1-149)||(5601579-5601727)
chr5 (78-148)||(24413672-24413742)
chr5 (78-148)||(30453465-30453535)
chr5 (78-148)||(30458543-30458613)
chr5 (166-239)||(19781874-19781947)
chr5 (77-149)||(24289951-24290023)
chr5 (77-149)||(24299458-24299530)
chr5 (76-149)||(22456710-22456783)
[»] chr3 (9 HSPs)
chr3 (1-241)||(8974155-8974395)
chr3 (1-241)||(6423616-6423856)
chr3 (1-241)||(9538444-9538684)
chr3 (1-241)||(12387297-12387536)
chr3 (1-149)||(48979673-48979821)
chr3 (78-140)||(28366940-28367002)
chr3 (78-149)||(4384458-4384529)
chr3 (90-140)||(28374773-28374823)
chr3 (90-140)||(28382595-28382645)
[»] chr1 (3 HSPs)
chr1 (1-241)||(16156192-16156432)
chr1 (1-239)||(1987981-1988219)
chr1 (1-181)||(22959697-22959877)
[»] scaffold0313 (2 HSPs)
scaffold0313 (1-239)||(7080-7318)
scaffold0313 (1-239)||(10862-11100)
[»] scaffold0254 (1 HSPs)
scaffold0254 (1-239)||(6360-6598)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-241)||(148017-148257)
[»] chr2 (6 HSPs)
chr2 (1-241)||(18652527-18652767)
chr2 (1-239)||(27168778-27169016)
chr2 (1-234)||(45015669-45015902)
chr2 (1-241)||(9512556-9512796)
chr2 (1-239)||(22903455-22903688)
chr2 (1-149)||(1791955-1792103)
[»] scaffold0141 (1 HSPs)
scaffold0141 (1-241)||(20084-20324)
[»] scaffold0016 (1 HSPs)
scaffold0016 (3-239)||(16538-16774)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-181)||(189318-189498)
[»] scaffold0529 (1 HSPs)
scaffold0529 (1-74)||(1-74)
[»] scaffold0028 (1 HSPs)
scaffold0028 (78-148)||(103154-103224)
[»] scaffold0010 (1 HSPs)
scaffold0010 (77-149)||(257898-257970)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 14892544 - 14892785
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14892544 tcaattctggtttctttgacatgagatgtaccctcatgatgtatttttaaggtatcccatacctctttatcattcttacattcatcaactctttcacttt 14892643  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||  |||    
T  14892644 cttccatggttagtgcacatgatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcacttttttctttgacagc 14892743  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatgat 242  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  14892744 tccttctttggttgttggaacaaagtctccatatgtgatgat 14892785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 21211762 - 21212002
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||  ||||| ||||| ||||||||||||||||||||||||    
T  21211762 tcaattctagtttctttgacatgagaagtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcatcaactctttcacttt 21211861  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  21211862 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 21211961  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    |||||||||| || |||||||||||||||||| ||||||||    
T  21211962 tccttctttgtttgttggaacaaagtctccatttgtgatga 21212002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 22832288 - 22832121
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    ||||||||||||||||||| |||||||||||| |||||||||| | |||| || ||||||||||||||  |||||||||| |||||||||||||||||||    
T  22832288 tcaattctagtttctttgatatgagatgtaccttcatgatgtactctcaaagtgtcccatacctctttggcatttttacactcatcaactctttcacttt 22832189  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttca 168  Q
    ||| |||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||    
T  22832188 ctttcatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttca 22832121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 18233831 - 18233759
Alignment:
Q  77 tacattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaatttaa 149  Q
    ||||||||| || |||||||||||||||||||||||||| ||||  || | |||||  ||||||||| |||||    
T  18233831 tacattcataaattctttcactttcttccatggttagtgaacattgtaaaaagagttgagctttagagtttaa 18233759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 18243282 - 18243210
Alignment:
Q  77 tacattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaatttaa 149  Q
    ||||||||| || |||||||||||||||||||||||||| ||||  || | |||||  ||||||||| |||||    
T  18243282 tacattcataaattctttcactttcttccatggttagtgaacattgtaaaaagagttgagctttagagtttaa 18243210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 12916458 - 12916388
Alignment:
Q  79 cattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaatttaa 149  Q
    ||||||| || |||||||||||||||||||||||||| ||||  || | |||||  ||||||||| |||||    
T  12916458 cattcataaattctttcactttcttccatggttagtgaacattgtaaaaagagttgagctttagagtttaa 12916388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 25036218 - 25036288
Alignment:
Q  79 cattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaatttaa 149  Q
    ||||||| || |||||||||||||||||||||||||| ||||  || | |||||  ||||||||| |||||    
T  25036218 cattcataaattctttcactttcttccatggttagtgaacattgtaaaaagagttgagctttagagtttaa 25036288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 25050255 - 25050325
Alignment:
Q  79 cattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaatttaa 149  Q
    ||||||| || |||||||||||||||||||||||||| ||||  || | |||||  ||||||||| |||||    
T  25050255 cattcataaattctttcactttcttccatggttagtgaacattgtaaaaagagttgagctttagagtttaa 25050325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 33600768 - 33600840
Alignment:
Q  77 tacattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaatttaa 149  Q
    ||||||||| ||  |||||||||||||||||||||| || ||||  |||| |||||  |||||| ||||||||    
T  33600768 tacattcataaatcctttcactttcttccatggttaatgaacattgtagaaagagttgagctttggaatttaa 33600840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 53322 - 53562
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  53322 tcaattctagtttctttgacatgagatgtaccctcatgatgtatttttaaggtatcccatacctctttagcattcttacattcatcaactctttcacttt 53421  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  |||    
T  53422 cttccatggttaatgcacatgatagaaagagtctagctttagaatttaacaatacctgagctttttcatctattgaccatgcactcttttctttgacagc 53521  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  53522 tccttctttggttgttggaacaaagtctccatctgtgatga 53562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 29541996 - 29541756
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  29541996 tcaattctagtttctttgacatgagattgaccctcatgatgtattttcaaggtatcccatacctctttagcattcttacattcatcaactctttcacttt 29541897  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||  |||    
T  29541896 cttccatggttagtgcacatgatagaaagagtctagctttagagtttaacaatacctgagccttttcatctgttgaccatgcactcttttctttgacagc 29541797  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  29541796 tccttctttggttgttggaacaaagtctccatctatgatga 29541756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 18161614 - 18161374
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  18161614 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcacttt 18161515  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  18161514 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 18161415  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  18161414 tccttctttggttgttggaacaaagtctccatctgtgatga 18161374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 16899495 - 16899255
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||| |||||| ||||| ||||||||||||||||||||||||    
T  16899495 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatctcatacttctttagcatttgtacattcatcaactctttcacttt 16899396  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  16899395 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 16899296  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  16899295 tccttctttggttgttggaacatagtctccatctgtgatga 16899255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 31359110 - 31358870
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  31359110 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcacttt 31359011  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  31359010 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 31358911  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||| ||| ||||||||    
T  31358910 tccttctttggttgttggaacaaagtcttcatttgtgatga 31358870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 34766905 - 34766667
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  34766905 tcaattctggtttctttgacatgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattcatcaactctttcacttt 34766806  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||| || |     
T  34766805 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagcaatacctgagccttttcatctgttgaccatgcactcttaacttt-gatga 34766707  T
Q  201 t-ccttctttggttattggaacaaagtctccatctgtgat 239  Q
    | ||||||||||||| ||||||||||||||||||||||||    
T  34766706 tcccttctttggttagtggaacaaagtctccatctgtgat 34766667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 18704835 - 18705073
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||| | |||  || || |||||||||||  |||||||||| |||||||||||| ||||||    
T  18704835 tcaattctagtttctttgacatgagatgtaccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcatcaactcttgcacttt 18704934  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||| ||||||||||||| | |||||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||| || ||   |||    
T  18704935 cttccatggtcagtgcacatgataaaaagagtctagctttagagtttagtaatacatgagctttttcatctgttgaccatgcactcttttcctttacagc 18705034  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgat 239  Q
    ||||| ||||||| ||| |||||||||||||||||||||    
T  18705035 tccttatttggttgttgcaacaaagtctccatctgtgat 18705073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 18710770 - 18711008
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||| | |||  || || |||||||||||  |||||||||| |||||||||||| ||||||    
T  18710770 tcaattctagtttctttgacatgagatgtaccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcatcaactcttgcacttt 18710869  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||| ||||||||||||| | |||||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||| || ||   |||    
T  18710870 cttccatggtcagtgcacatgataaaaagagtctagctttagagtttagtaatacatgagctttttcatctgttgaccatgcactcttttcctttacagc 18710969  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgat 239  Q
    ||||| ||||||| ||| |||||||||||||||||||||    
T  18710970 tccttatttggttgttgcaacaaagtctccatctgtgat 18711008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 17150922 - 17150684
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  17150922 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttagcattcttacattcatcaactctttcacttt 17150823  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    ||||||||||||||||| |||||||| |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||||||  ||     
T  17150822 cttccatggttagtgcaaatgatagaaagagtctagctttaaagtttaacaatacctgagcattttcatctgttgaccatgcactcttttctttgacagt 17150723  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgat 239  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  17150722 tccttcgttggttgttggaacaaagtctccatctgtgat 17150684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 520705 - 520943
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  520705 tcaattctggtttctttgacatgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattcatcaactctttcacttt 520804  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||| || |     
T  520805 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagcaatacctgagccttttcatctgttgaccatgcactcttaacttt-gatga 520903  T
Q  201 t-ccttctttggttattggaacaaagtctccatctgtgat 239  Q
    | ||||||||||||| ||||||||||||||||||||||||    
T  520904 tcccttctttggttagtggaacaaagtctccatctgtgat 520943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 16254782 - 16254548
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||| |||| |||||||||||||||||||||||||    
T  16254782 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatccc-----tctttagcattcttacattcatcaactctttcacttt 16254688  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| ||| ||  | |    
T  16254687 cttccatggttagtgcacatgatagaaagagtctagctttagagtttaacaatacttgagctttttcatctgttgaccatgtactcttttctgtgacaac 16254588  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatg 240  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  16254587 tccttctttggttgttggaacaaagtctccatctgtgatg 16254548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 6693767 - 6693527
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||  ||||| ||||| ||||||||||||||||||||||||    
T  6693767 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcatcaactctttcacttt 6693668  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  6693667 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 6693568  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    |||||||||| || |||||||||||||||||| ||||||||    
T  6693567 tccttctttgtttgttggaacaaagtctccatttgtgatga 6693527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 7845250 - 7845488
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||||| |||||||||||||||||||    
T  7845250 tcaattctagtttctttgacatgagatgtaccctcatgatatattttcagagtgtcccatacctctttggcatttttacactcatcaactctttcacttt 7845349  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| | |||||||||||||| ||||  ||||| ||||| ||||||||||||||||||||  |||| || ||   |||    
T  7845350 cttccatggttagtgcacatgatagaaaaagtctagctttagagtttagtaatacatgagccttttcatctgttgaccatgccttcttttcctttatagc 7845449  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgat 239  Q
    |||||||||| || |||||||||||||||||||||||||    
T  7845450 tccttctttgtttgttggaacaaagtctccatctgtgat 7845488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 54698640 - 54698710
Alignment:
Q  78 acattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaattta 148  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||| ||||    
T  54698640 acattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaagagtcgagctttagagttta 54698710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 26813404 - 26813342
Alignment:
Q  78 acattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagcttt 140  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||    
T  26813404 acattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaagagtcgagcttt 26813342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 9544032 - 9544272
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  9544032 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagggtatcccatacttctttagcatttgtacattcatcaactctttcacttt 9544131  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  9544132 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 9544231  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  9544232 tccttctttggttgttggaacaaagtctccatctgtgatga 9544272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 16140976 - 16141216
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  16140976 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcacttt 16141075  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  16141076 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 16141175  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  16141176 tccttctttggttgttggaacaaagtctccatctgtgatga 16141216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 5389963 - 5390203
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  5389963 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcacttt 5390062  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  5390063 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 5390162  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  5390163 tccttctttggttgttggaacaaagtctccatttgtgatga 5390203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 26305105 - 26304865
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  26305105 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcacttt 26305006  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  26305005 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 26304906  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  26304905 tccttctttggttgttggaacaaagtctccatttgtgatga 26304865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 26361713 - 26361953
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  26361713 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcacttt 26361812  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  26361813 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 26361912  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  26361913 tccttctttggttgttggaacaaagtctccatttgtgatga 26361953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 32099929 - 32099689
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  32099929 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcacttt 32099830  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  32099829 cttccatggttagtgcacatgatagaaagagtctagctttagagtttaataatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 32099730  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||| ||||||| ||||||||    
T  32099729 tccttctttggttgttggaacaaaatctccatttgtgatga 32099689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 46498663 - 46498423
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  46498663 tcaattctagtttctttgacatgaaatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcacttt 46498564  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  46498563 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 46498464  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  46498463 tccttctttggttgttggaacaaagtctccatctgtgatga 46498423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8502598 - 8502358
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||  ||||| ||||| ||||||||||||||||||||||||    
T  8502598 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcatcaactctttcacttt 8502499  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  8502498 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 8502399  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    |||||||||| || |||||||||||||||||| ||||||||    
T  8502398 tccttctttgtttgttggaacaaagtctccatttgtgatga 8502358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 44898848 - 44898608
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||  ||||| ||||| ||||||||||||||||||||||||    
T  44898848 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcatcaactctttcacttt 44898749  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  44898748 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 44898649  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    |||||||||| || |||||||||||||||||| ||||||||    
T  44898648 tccttctttgtttgttggaacaaagtctccatttgtgatga 44898608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 6536033 - 6535793
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||  ||||| ||||| ||||||||||||||||||||||||    
T  6536033 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcatcaactctttcacttt 6535934  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  |||||||||||||||||||||| |||||||||||| ||  |||||  |||    
T  6535933 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgctgaccatgcactttttgctttgacagc 6535834  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    |||||||||| || |||||||||||||||||| ||||||||    
T  6535833 tccttctttgtttgttggaacaaagtctccatttgtgatga 6535793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 13284221 - 13284416
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||| |||| || ||||||||||||||||||||||    
T  13284221 tcaattctagtttctttgacatgagatgtaccttcatgatgtactttcaaagtatcccatacctctttagcattcttgcattcatcaactctttcacttt 13284320  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgac-catgcactcttatctttg 195  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||||    
T  13284321 cttccatggttagtgcacataatagaaagagtctagctttagaatttaacaatacttgagatttttcatctgttgacacatgcactcttttctttg 13284416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 42596858 - 42596698
Alignment:
Q  79 cattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgacc 178  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42596858 cattcatcacctctttcactttcttccatggttagtgcacatgatagaaagagtctagctttagagtttaacaatacctgagctttttcatctgttgacc 42596759  T
Q  179 atgcactcttatctttggaagctccttctttggttattggaacaaagtctccatctgtgat 239  Q
    |||||||||| ||||||   | ||||| ||||||  |||||||||||||||||||||||||    
T  42596758 atgcactcttttctttgatggttccttttttggtctttggaacaaagtctccatctgtgat 42596698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 7582547 - 7582477
Alignment:
Q  78 acattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaattta 148  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||||||    
T  7582547 acattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaagagtcgagctttagaattta 7582477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 15175456 - 15175386
Alignment:
Q  78 acattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaattta 148  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| | |||| ||||||||| ||||    
T  15175456 acattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaaaagtcaagctttagagttta 15175386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42596907 - 42596865
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgta 43  Q
    |||||| ||||||||||||||||||||||||| ||||||||||    
T  42596907 tcaattatagtttctttgacatgagatgtaccttcatgatgta 42596865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 18362826 - 18362586
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  18362826 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcacttt 18362727  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  18362726 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 18362627  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  18362626 tccttctttggttgttggaacaaagtctccatctgtgatga 18362586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 26201117 - 26201357
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  26201117 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcacttt 26201216  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  26201217 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 26201316  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  26201317 tccttctttggttgttggaacaaagtctccatttgtgatga 26201357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 27413697 - 27413457
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  27413697 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcacttt 27413598  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||  ||||||||| ||||||||||||||||||||||||| ||  |||||  |||    
T  27413597 cttccatggttagtgcacatgatagaaagagtctagctttaaaatttagtaatacctgacctttttcatctgttgaccatgcactttttgctttgacagc 27413498  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  27413497 tccttctttggttgttggaacaaagtctccatctgtgatga 27413457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 20949404 - 20949166
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  20949404 tcaattctggtttctttgacatgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattcatcaactctttcacttt 20949305  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||| || |     
T  20949304 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagcaatacctgagccttttcatctgttgaccatgcactcttaacttt-gatga 20949206  T
Q  201 t-ccttctttggttattggaacaaagtctccatctgtgat 239  Q
    | ||||||||||||| ||||||||||||||||||||||||    
T  20949205 tcccttctttggttagtggaacaaagtctccatctgtgat 20949166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 33940869 - 33940629
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||  ||||| ||||| ||||||||||||||||||||||||    
T  33940869 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcatcaactctttcacttt 33940770  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  33940769 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 33940670  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    |||||||||| || |||||||||||||||||| ||||||||    
T  33940669 tccttctttgtttgttggaacaaagtctccatttgtgatga 33940629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 23375691 - 23375927
Alignment:
Q  3 aattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcactttct 102  Q
    |||||| ||||| ||||||||||| ||||| |||||  ||| | | ||  | ||||||||||||||| |||| || |||| ||||||||||||| |||||    
T  23375691 aattctggtttccttgacatgagaggtaccttcatggcgtactcttaaaatttcccatacctctttagcattcttgcatttatcaactctttcattttct 23375790  T
Q  103 tccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagctc 202  Q
    |||||||||||||||||||||| | ||||||||| |||||| ||||||||||| |||||||| |||||| |||||||||||||||| | ||||   | ||    
T  23375791 tccatggttagtgcacatgataaaaagagtctaggtttagagtttaacaatacatgagctttgtcatctattgaccatgcactcttttgtttgatggttc 23375890  T
Q  203 cttctttggttattggaacaaagtctccatctgtgat 239  Q
    ||||||| ||  |||||||||||||||||| ||||||    
T  23375891 cttctttagtctttggaacaaagtctccatttgtgat 23375927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 5601727 - 5601579
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||| |||||||| |||||   ||| || |||||||| | ||| |  |||||||| |||| |||  || | | |||||||||||||||||||||||    
T  5601727 tcaattcttgtttctttaacatggcttgttccttcatgatggactttgagagtatcccacaccttttttgcagtatcacattcatcaactctttcacttt 5601628  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaa 149  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||    
T  5601627 cttccatgcttagtgcacatgatagaaagagtcgagctttagaatttaa 5601579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 24413742 - 24413672
Alignment:
Q  78 acattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaattta 148  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||| ||||    
T  24413742 acattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaagagtcgagctttagagttta 24413672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 30453465 - 30453535
Alignment:
Q  78 acattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaattta 148  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||| ||||    
T  30453465 acattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaagagtcgagctttagagttta 30453535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 30458543 - 30458613
Alignment:
Q  78 acattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaattta 148  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||| ||||    
T  30458543 acattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaagagtcgagctttagagttta 30458613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 19781947 - 19781874
Alignment:
Q  166 tcatctgttgaccatgcactcttatctttggaagctccttctttggttattggaacaaagtctccatctgtgat 239  Q
    |||||||| ||||||||||| || || ||   | |||||||||||||| |||||||||||||||||||||||||    
T  19781947 tcatctgtggaccatgcactattttcctttacaactccttctttggttgttggaacaaagtctccatctgtgat 19781874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 24289951 - 24290023
Alignment:
Q  77 tacattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaatttaa 149  Q
    ||||||||| || |||||||||||||||||||||||||| ||||  || | |||||  ||||||||| |||||    
T  24289951 tacattcataaattctttcactttcttccatggttagtgaacattgtaaaaagagttgagctttagagtttaa 24290023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 24299458 - 24299530
Alignment:
Q  77 tacattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaatttaa 149  Q
    ||||||||| || |||||||||||||||||||||||||| ||||  || | |||||  ||||||||| |||||    
T  24299458 tacattcataaattctttcactttcttccatggttagtgaacattgtaaaaagagttgagctttagagtttaa 24299530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 22456710 - 22456783
Alignment:
Q  76 ttacattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaatttaa 149  Q
    |||||||||| || ||||||||||||||||||||||| || ||||  || | |||||  |||||| ||||||||    
T  22456710 ttacattcataaattctttcactttcttccatggttaatgaacattgtaaaaagagttgagctttggaatttaa 22456783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8974395 - 8974155
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  8974395 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcacttt 8974296  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  8974295 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 8974196  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  8974195 tccttctttggttgttggaacaaagtctccatctgtgatga 8974155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 6423856 - 6423616
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  6423856 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcacttt 6423757  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    ||||||||||||||||||| |||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||| | ||  |||||  |||    
T  6423756 cttccatggttagtgcacacgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcattttttgctttgacagc 6423657  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  6423656 tccttctttggttgttggaacaaagtctccatctgtgatga 6423616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 9538684 - 9538444
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| | |||| ||||| ||||||||||||||||||||||||    
T  9538684 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttgtttagcatttgtacattcatcaactctttcacttt 9538585  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  9538584 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 9538485  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  9538484 tccttctttggttgttggaacaaagtctccatttgtgatga 9538444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 12387536 - 12387297
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||| | |||||||||| | ||||||||||||||||||||||  |||| ||| |||||| |||||||||| |||    
T  12387536 tcaattctagtttctttgacatgagatgtaacttcatgatgtactatcaaggtatcccatacctctttg-cattcttaaattcataaactctttcagttt 12387438  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||| ||||||||||||| ||||||||||||||| || ||||||  ||     
T  12387437 cttccatggttagtgcacatgatagaaagagtctagctttagagtttattaatacttgagctttttcatttgttgaccatgcacttttttctttgacagt 12387338  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  12387337 tccttctttggtttttggaacaaagtctccatctgtgatga 12387297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 48979821 - 48979673
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||| |||||||| |||||   ||| || |||||||| | ||| |  |||||||| |||| |||  || | | |||||||||||||||||||||||    
T  48979821 tcaattcttgtttctttaacatggcttgttccttcatgatggactttgagagtatcccacaccttttttgcagtatcacattcatcaactctttcacttt 48979722  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaa 149  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||    
T  48979721 cttccatgcttagtgcacatgatagaaagagtcgagctttagaatttaa 48979673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 28366940 - 28367002
Alignment:
Q  78 acattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagcttt 140  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||    
T  28366940 acattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaagagtcgagcttt 28367002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 4384458 - 4384529
Alignment:
Q  78 acattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaatttaa 149  Q
    ||||||||||||||||||||||||||||||| ||| |   ||||||||| ||| || |||||||||||||||    
T  4384458 acattcatcaactctttcactttcttccatgcttaatctgcatgatagatagactcgagctttagaatttaa 4384529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 28374773 - 28374823
Alignment:
Q  90 tctttcactttcttccatggttagtgcacatgatagacagagtctagcttt 140  Q
    ||||||||||||||||||| ||||||| ||||||||| |||||| ||||||    
T  28374773 tctttcactttcttccatgcttagtgcgcatgatagaaagagtcgagcttt 28374823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 28382595 - 28382645
Alignment:
Q  90 tctttcactttcttccatggttagtgcacatgatagacagagtctagcttt 140  Q
    ||||||||||||||||||| ||||||| ||||||||| |||||| ||||||    
T  28382595 tctttcactttcttccatgcttagtgcgcatgatagaaagagtcgagcttt 28382645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 16156432 - 16156192
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  16156432 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcacttt 16156333  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  16156332 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 16156233  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  16156232 tccttctttggttgttggaacaaagtctccatctgtgatga 16156192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1987981 - 1988219
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  1987981 tcaattctggtttctttgacatgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattcatcaactctttcacttt 1988080  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||         
T  1988081 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagcaatacctgagccttttcatctgttgaccatgcactcttaactttgatgat 1988180  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgat 239  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1988181 tccttctttggttaatggaacaaagtctccatctgtgat 1988219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 22959877 - 22959697
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||| ||||||| ||||||||  || || |||||||||| ||| || || ||||| || |||||  ||||| ||||||||||||| ||||||||||    
T  22959877 tcaattcttgtttcttcgacatgagtggttccttcatgatgtacttttaaagtgtcccacacttctttggcatttgtacattcatcaaccctttcacttt 22959778  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatg 181  Q
    |||||| ||||| ||||||||||| | | |  ||| ||||||||||||||||||||| | |||||||||| |||| |||||    
T  22959777 cttccaaggttaatgcacatgataaaaataagctaactttagaatttaacaataccttatctttttcatcagttgtccatg 22959697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 7318 - 7080
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  7318 tcaattctggtttctttgacatgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattcatcaactctttcacttt 7219  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||| || |     
T  7218 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagcaatacctgagccttttcatctgttgaccatgcactcttaacttt-gatga 7120  T
Q  201 t-ccttctttggttattggaacaaagtctccatctgtgat 239  Q
    | ||||||||||||| ||||||||||||||||||||||||    
T  7119 tcccttctttggttagtggaacaaagtctccatctgtgat 7080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 11100 - 10862
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  11100 tcaattctggtttctttgacatgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattcatcaactctttcacttt 11001  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||| || |     
T  11000 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagcaatacctgagccttttcatctgttgaccatgcactcttaacttt-gatga 10902  T
Q  201 t-ccttctttggttattggaacaaagtctccatctgtgat 239  Q
    | ||||||||||||| ||||||||||||||||||||||||    
T  10901 tcccttctttggttagtggaacaaagtctccatctgtgat 10862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6360 - 6598
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  6360 tcaattctggtttctttgacatgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattcatcaactctttcacttt 6459  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||| || |     
T  6460 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagcaatacctgagccttttcatctgttgaccatgcactcttaacttt-gatga 6558  T
Q  201 t-ccttctttggttattggaacaaagtctccatctgtgat 239  Q
    | ||||||||||||| ||||||||||||||||||||||||    
T  6559 tcccttctttggttagtggaacaaagtctccatctgtgat 6598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 148257 - 148017
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||    
T  148257 tcaattctagtttctttgacatgagaagtaccctcatgatgtatttttaaggtatcacatacctctttagcattcttacattcatcaactctttcacttt 148158  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||| ||||||||||||||| |||||||||||| ||| ||||  ||||||||||||||||||| |||||||||||||||||| || ||   |||    
T  148157 cttccatggtaagtgcacatgatagaaagagtctagcttaagagtttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagc 148058  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  148057 tccttctttggttgttggaacaaagtctccatctgtgatga 148017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 18652767 - 18652527
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||  ||||| ||||| ||||||||||||||||||||||||    
T  18652767 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcatcaactctttcacttt 18652668  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  18652667 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 18652568  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    |||||||||| || |||||||||||||||||| ||||||||    
T  18652567 tccttctttgtttgttggaacaaagtctccatttgtgatga 18652527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 27168778 - 27169016
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||| || |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  27168778 tcaattctggtctctttgacatgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattcatcaactctttcacttt 27168877  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||| || |     
T  27168878 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagcaatacctgagccttttcatctgttgaccatgcactcttaacttt-gatga 27168976  T
Q  201 t-ccttctttggttattggaacaaagtctccatctgtgat 239  Q
    | ||||||||||||| ||||||||||||||||||||||||    
T  27168977 tcccttctttggttagtggaacaaagtctccatctgtgat 27169016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 45015902 - 45015669
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  45015902 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttgtacattcatcaactctttcacttt 45015803  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||| | ||| |||||||||||| | ||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  45015802 cttccatggttagtgcacatgataaaaagactctagctttagagtatagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 45015703  T
Q  201 tccttctttggttattggaacaaagtctccatct 234  Q
    ||||||||||||| |||||||||| ||| |||||    
T  45015702 tccttctttggttgttggaacaaaatcttcatct 45015669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 9512556 - 9512796
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||  ||||| ||||| |||| |||||||||||||||||||    
T  9512556 tcaattctagtttctctgacatgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacactcatcaactctttcacttt 9512655  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  |||||  |||    
T  9512656 cttccatggttagtgcacatgatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagc 9512755  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    |||||||||| || |||||||||||||||||| ||||||||    
T  9512756 tccttctttgtttgttggaacaaagtctccatttgtgatga 9512796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 22903688 - 22903455
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||| | ||||  |||||||||| |||||| ||||  ||||||||||||||||||||||||    
T  22903688 tcaattctagtttctttgacatgagatgtaccatcatgatgtaatatcaaaatatcccatacatctttagcattaatacattcatcaactctttcacttt 22903589  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||   |     
T  22903588 cttccatggttagtgcacatgatagaaagagtctagctttagagtttaacaatacctgagttttttcatctgttgaccatgcactcttttctttgatggt 22903489  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgat 239  Q
    |||||||||     ||||||||||||||| |||||||||    
T  22903488 tccttcttt-----ttggaacaaagtctctatctgtgat 22903455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 1792103 - 1791955
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||| |||||||| |||||   ||| || |||||||| | ||| |  |||||||| |||| |||  || | | |||||||||||||||||||||||    
T  1792103 tcaattcttgtttctttaacatggcttgttccttcatgatggactttgagagtatcccacaccttttttgcagtatcacattcatcaactctttcacttt 1792004  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaa 149  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||    
T  1792003 cttccatgcttagtgcacatgatagaaagagtcgagctttagaatttaa 1791955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 20324 - 20084
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||||||| ||||||||||||||||||| | |||||||| | |||  || |||||||| |||||  ||||||||||  ||||||||||||||||||    
T  20324 tcaattctagttcctttgacatgagatgtacctttatgatgtactctcagagtgtcccatacatctttggcatttttacacacatcaactctttcacttt 20225  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagc 200  Q
    ||||| | || ||||||||||||||| ||||||||||||| || ||||  |||||||||| |||||||||||||||||||||||| || |||||   |||    
T  20224 cttccctagtcagtgcacatgatagaaagagtctagctttggagtttagtaatacctgagatttttcatctgttgaccatgcacttttttcttttacagc 20125  T
Q  201 tccttctttggttattggaacaaagtctccatctgtgatga 241  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  20124 tccttctttggttgttggaacaaagtctccatctgtgatga 20084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 16774 - 16538
Alignment:
Q  3 aattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcactttct 102  Q
    |||||| ||||| ||||||||||| ||||| |||||  ||| | | ||  | ||||||||||||||| |||| || |||| ||||||||||||| |||||    
T  16774 aattctggtttccttgacatgagaggtaccttcatggcgtactcttaaaatttcccatacctctttagcattcttgcatttatcaactctttcattttct 16675  T
Q  103 tccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggaagctc 202  Q
    |||||||||||||||||||||| | ||||||||| |||||| ||||||||||| |||||||| |||||| |||||||||||||||| | ||||   | ||    
T  16674 tccatggttagtgcacatgataaaaagagtctaggtttagagtttaacaatacatgagctttgtcatctattgaccatgcactcttttgtttgatggttc 16575  T
Q  203 cttctttggttattggaacaaagtctccatctgtgat 239  Q
    ||||||| ||  |||||||||||||||||| ||||||    
T  16574 cttctttagtctttggaacaaagtctccatttgtgat 16538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 189318 - 189498
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatttttacattcatcaactctttcacttt 100  Q
    |||||||| ||||||| ||||||||| || || |||||||||| ||| || || ||||| || |||||  ||||| ||||||||||||| |||||| |||    
T  189318 tcaattcttgtttcttcgacatgagaggttccttcatgatgtacttttaaagtgtcccacacttctttggcatttgtacattcatcaaccctttcaattt 189417  T
Q  101 cttccatggttagtgcacatgatagacagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatg 181  Q
    |||||| ||||||||||||||||| | | |  ||| ||||||||||||||||||||| | |||||||||| |||| |||||    
T  189418 cttccaaggttagtgcacatgataaaaataagctaactttagaatttaacaataccttatctttttcatcagttgtccatg 189498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0529 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0529
Description:

Target: scaffold0529; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 74 - 1
Alignment:
Q  1 tcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttatcatt 74  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||| ||||    
T  74 tcaattctagtttctttgacatgagatgtaccttcatgatgtactttcaaagtatcccatacctctttagcatt 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 103154 - 103224
Alignment:
Q  78 acattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaattta 148  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||| ||||    
T  103154 acattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaagagtcgagctttagagttta 103224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 257970 - 257898
Alignment:
Q  77 tacattcatcaactctttcactttcttccatggttagtgcacatgatagacagagtctagctttagaatttaa 149  Q
    ||||||||| || |||||||||||||||||||||||||| ||||  || | |||||  ||||||||| |||||    
T  257970 tacattcataaattctttcactttcttccatggttagtgaacattgtaaaaagagttgagctttagagtttaa 257898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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