View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0246_high_1 (Length: 524)
Name: NF0246_high_1
Description: NF0246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0246_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 103 - 498
Target Start/End: Original strand, 12308752 - 12309148
Alignment:
| Q |
103 |
tttggtggaaaatcgatttttggtgaattcatgtcgtagcctttctatctcatcacgttcttgttgagttccagcatttggatcgaattcccaatgttga |
202 |
Q |
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| T |
12308752 |
tttgttggaaaatcgatttttggtgaattcatgtcgtagcctttctatctcatcacgttcttgttgagttccagcatttggatcgaattcccaatgttga |
12308851 |
T |
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| Q |
203 |
cgtcctatgaaattgtttaaggaaatcaacctttctcctccttctcctatcttcaacttccacatattttcttttcactatgatactactcttctcttct |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12308852 |
cgtcctatgaaattgtttaaggaaatcaacctttctccaccttctcctatcttcaacttccacatattttcttttcactatgatactactcttctcttct |
12308951 |
T |
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| Q |
303 |
tcctttcttatgtgaccgactaagatgttataaatactaatatcaatattccattag--tatataaatcacaacgtacaaggtacttcttttatttataa |
400 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12308952 |
tcctttcttatgtgaccgaccaagatgttataaatactaatatcaatattccattagtatatataaatcacaacgtacaaggtacttcatttatttataa |
12309051 |
T |
|
| Q |
401 |
aataaagcatcgagaagagagaatatggcagaaatatcgttgacccgcaaatagagattttttattttgtttatatgcaagtggaagcctttttatat |
498 |
Q |
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| T |
12309052 |
aataaagcatcgaggagagagaatatgatagaaatatcgttga-ccgcaaatagagattttttattttgtttatgtgcatgtggaagcctttatatat |
12309148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 97 - 274
Target Start/End: Original strand, 12344481 - 12344658
Alignment:
| Q |
97 |
actaactttggtggaaaatcgatttttggtgaattcatgtcgtagcctttctatctcatcacgttcttgttgagttccagcatttggatcgaattcccaa |
196 |
Q |
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||||||||||||||||||||| |||||||||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12344481 |
actaactttggtggaaaatcggtttttggtgaattcatagcgcaacctttcaatctcatcacgttcttgttgagttccagcatttggatcgaattcccag |
12344580 |
T |
|
| Q |
197 |
tgttgacgtcctatgaaattgtttaaggaaatcaacctttctcctccttctcctatcttcaacttccacatattttct |
274 |
Q |
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| T |
12344581 |
tgttgacgtccaatgaaattgttccctgaaatcaacctttctccaccttctgctatcttcaacttccacattttttct |
12344658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 119 - 272
Target Start/End: Original strand, 35189064 - 35189217
Alignment:
| Q |
119 |
tttttggtgaattcatgtcgtagcctttctatctcatcacgttcttgttgagttccagcatttggatcgaattcccaatgttgacgtcctatgaaattgt |
218 |
Q |
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||||||||||||| | ||||||||||| |||||| || |||||| | | ||||| ||||||||||| |||||||| |||||||||||||| || || | |
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| T |
35189064 |
tttttggtgaattgaatgcgtagcctttcaatctcagcatgttcttctggtgttcctgcatttggatcaaattcccagtgttgacgtcctataaagttat |
35189163 |
T |
|
| Q |
219 |
ttaaggaaatcaacctttctcctccttctcctatcttcaacttccacatatttt |
272 |
Q |
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| | |||||||||| ||||||||||||| ||||||||||||||||||| |||| |
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| T |
35189164 |
tcacagaaatcaacccttctcctccttctgctatcttcaacttccacatctttt |
35189217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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