View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0246_high_4 (Length: 383)
Name: NF0246_high_4
Description: NF0246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0246_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 2298522 - 2298280
Alignment:
| Q |
1 |
aaatgtgtgtaaatgtgactgtgcctcctttggttttactgaataattgtacctcattagtctttatcacttttaacattactctaaaattctaaattgn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2298522 |
aaatgtgtgtaaatgtgactgtgcctcctttggttttactgaataattgtacctcattagtctttatcacttttaacattactctaaaattctaaattgt |
2298423 |
T |
|
| Q |
101 |
nnnnnnnnnctttctgtaaaattgaaatcaatgatcaatggcacctaattagaaaaggacaaatatgaaaaatagtttctcaagagataatttattattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2298422 |
tttttttttctttctgtaaaattgaaatcaatgatcaatggcacctaattagaaaaggacaaatatgaaaaatagtttctcaagagataatttattattg |
2298323 |
T |
|
| Q |
201 |
tcccatttttaaactcttctttaccccttcatcaatagaataa |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2298322 |
tcccatttttaaactcttctttaccccttcatcaatagaataa |
2298280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 2322489 - 2322280
Alignment:
| Q |
11 |
aaatgtgactgtgcctcctttggttttactgaataattgtacctcattagtctttatcacttttaacattactctaaaattctaaattgnnnnnnnnnnc |
110 |
Q |
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|||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
2322489 |
aaatgtgattgtgcctcctttggttttactgaatatt---acctcattagtctttatcacttttaacattactctagaattccaaattgtttt------- |
2322400 |
T |
|
| Q |
111 |
tttctgtaaaattgaaatcaatgatcaatggcacctaattagaaaaggacaaatatgaaaaatagtttctcaagagataatttattattgtcccattttt |
210 |
Q |
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| T |
2322399 |
tttctgtaaaattgaaatcaatga-------cacctaattagacaatgacatatatgaaaaatagtttctcaagagataatttattattgtcccattttt |
2322307 |
T |
|
| Q |
211 |
aaactcttctttaccccttcatcaata |
237 |
Q |
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||||||||| ||||||||||||||||| |
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| T |
2322306 |
aaactcttcattaccccttcatcaata |
2322280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 284 - 379
Target Start/End: Complemental strand, 47074789 - 47074694
Alignment:
| Q |
284 |
aaaaggcgcaaattttgtcatgcgatcaacacgcaatggacaagagaaggtattcattggtccctgaaatcgaatttgtgtgatattttggatttg |
379 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47074789 |
aaaaggcgcaaattttgtcatgcgatccacacgcaatggacaagagaaggtattcattggtccctgaaatcgaatttgtgttatattttggatttg |
47074694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 47056811 - 47056763
Alignment:
| Q |
294 |
aattttgtcatgcgatcaacacgcaatggacaagagaaggtattcattg |
342 |
Q |
| |
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||||||||||||| ||| | |||||| |||||||||||||| ||||||| |
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| T |
47056811 |
aattttgtcatgccatccaaacgcaaaggacaagagaaggtgttcattg |
47056763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 18230616 - 18230687
Alignment:
| Q |
283 |
aaaaaggcgcaaattttgtcatgcgatcaacacgcaatggacaagagaaggtattcattggtccctgaaatc |
354 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| |||||| |||| |
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| T |
18230616 |
aaaaaggcgcaaattttgtcatgccatccacacgcaatggacaagagaaggtgttcattgatccctgcaatc |
18230687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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