View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0246_high_6 (Length: 362)
Name: NF0246_high_6
Description: NF0246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0246_high_6
[» ] chr4 (1 HSPs)
Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 362
Target Start/End: Complemental strand, 25794595 - 25794250
Alignment:
Q
16
atgcctctcgattttcggattttagaatccgtcaagggaaaaatttagccacggtatctgttttttcagaatctttacacatttgaaatctggaatccga
115
Q
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
25794595
atgcctctcgattttcggattttagaatccgtcaagggaaaaaattagccacggtatctgttttttcagaatctttacacatttgaaatctggaatccga
25794496
T
Q
116
acacccctcttgatattgtctttgtttnnnnnnnttatgatcatatggtcaagatggggagcaaaaagggagtgttggtccttattttgtaaattttttg
215
Q
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
T
25794495
acacccctcttgatattgtctttgtttaaaaaaattatgatcatatggtcaagatggggagcaaaaagggagtgttggtccttattttgtaaattttt-g
25794397
T
Q
216
tatcagctcttatattatagccaatcaaagagatttctgactcattgagaatttacaacagaatttacagataacctaccaagtatggaattttggactc
315
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
25794396
tatcagctcttatattatagccaatcaaagagatttctgactcattgagaatttacaacagaatttacagataacctaccaagtatggaattttggactc
25794297
T
Q
316
aaacctaagttgtaatccgtatgagaggaaagtcttaccatgtgtgc
362
Q
||||| |||||||||||||||||||||||||||||||||||||||||
T
25794296
aaacccaagttgtaatccgtatgagaggaaagtcttaccatgtgtgc
25794250
T
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Alignment Overview ]
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