View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0246_low_10 (Length: 265)
Name: NF0246_low_10
Description: NF0246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0246_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 40 - 251
Target Start/End: Complemental strand, 19720520 - 19720309
Alignment:
| Q |
40 |
catgacagcatggaatcccgcgtgactcaaacagtttacacgaacactgaaattctaaacttgcagcatcgtatacaacctctctttcaatgcctttctc |
139 |
Q |
| |
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||||||| ||||||||||| ||||||||||| ||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
19720520 |
catgacaacatggaatcccacgtgactcaaatagtatacacaaacactgaaattctaaactttcaacatcgtatacaacctctctttcaatgcctttctc |
19720421 |
T |
|
| Q |
140 |
acgatattttcgcaatgtataaaccatggtatcccccacacattttttgtgcttcagacttactgcaccagcctcattaatttcatctttaacttcttta |
239 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||| ||||||||| ||| |||| || ||||||||| ||| |||||| |||||||||||||||| |
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| T |
19720420 |
acgatatttttgcaatgtataaaccatggaatcccccacatattttttgtccttgagacgtattgcaccagcatcaataattttatctttaacttcttta |
19720321 |
T |
|
| Q |
240 |
aagatctctgct |
251 |
Q |
| |
|
|||||||||||| |
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|
| T |
19720320 |
aagatctctgct |
19720309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 40 - 251
Target Start/End: Complemental strand, 25517301 - 25517090
Alignment:
| Q |
40 |
catgacagcatggaatcccgcgtgactcaaacagtttacacgaacactgaaattctaaacttgcagcatcgtatacaacctctctttcaatgcctttctc |
139 |
Q |
| |
|
||||||| || |||||||| | |||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25517301 |
catgacaccaaggaatcccacacgactcaaatagtctacacgaacactgaaattctaaacttgcagcatcatatacaacctctctttcaatgcctttctc |
25517202 |
T |
|
| Q |
140 |
acgatattttcgcaatgtataaaccatggtatcccccacacattttttgtgcttcagacttactgcaccagcctcattaatttcatctttaacttcttta |
239 |
Q |
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|
|||||||||||||||||||||||| |||| |||||| ||||||||||||| || |||| || ||||||||| ||| ||||||||||||||||||||||| |
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| T |
25517201 |
acgatattttcgcaatgtataaacaatggaatccccaacacattttttgtcctcgagacgtattgcaccagcatcaataatttcatctttaacttcttta |
25517102 |
T |
|
| Q |
240 |
aagatctctgct |
251 |
Q |
| |
|
|||||||||||| |
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|
| T |
25517101 |
aagatctctgct |
25517090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 40 - 251
Target Start/End: Original strand, 25517982 - 25518192
Alignment:
| Q |
40 |
catgacagcatggaatcccgcgtgactcaaacagtttacacgaacactgaaattctaaacttgcagcatcgtatacaacctctctttcaatgcctttctc |
139 |
Q |
| |
|
|||||||||| |||||||| | ||||||||| ||| |||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| ||| |
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| T |
25517982 |
catgacagcaaggaatcccacatgactcaaatagtctacacgaacacttaaattctaaacttgcagtatcatatacaacctctctttcaatgcctt-ctc |
25518080 |
T |
|
| Q |
140 |
acgatattttcgcaatgtataaaccatggtatcccccacacattttttgtgcttcagacttactgcaccagcctcattaatttcatctttaacttcttta |
239 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| || ||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
25518081 |
acgatattttcgcaatgtataaaccatggaatcccccacacattttttgtcctcgagacgtattgcaccagcatcaataatttcatctttaacttcttta |
25518180 |
T |
|
| Q |
240 |
aagatctctgct |
251 |
Q |
| |
|
|||||||||||| |
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|
| T |
25518181 |
aagatctctgct |
25518192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 40 - 250
Target Start/End: Original strand, 8773535 - 8773744
Alignment:
| Q |
40 |
catgacagcatggaatcccgcgtgactcaaacagtttacacgaacactgaaattctaaacttgcagcatcgtatacaacctctctttcaatgcctttctc |
139 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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|
| T |
8773535 |
catgacaacatggaatcccacgtgactcaaatagtctacacgaacactgaaattctaaacttgcagcattgtatacaacctctctttcaatgcctttgtc |
8773634 |
T |
|
| Q |
140 |
acgatattttcgcaatgtataaaccatggtatcccccacacattttttgtgcttcagacttactgcaccagcctcattaatttcatctttaacttcttta |
239 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||| |||||| | || |||| || |||||||| ||| ||||||||||||||||||||||| |
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|
| T |
8773635 |
acgatattttcgcaatgtataaaccaaggaatcccccacac-ttttttttcctcgagacgtattgcaccagaatcaataatttcatctttaacttcttta |
8773733 |
T |
|
| Q |
240 |
aagatctctgc |
250 |
Q |
| |
|
||||||||||| |
|
|
| T |
8773734 |
aagatctctgc |
8773744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 40 - 250
Target Start/End: Complemental strand, 7557166 - 7556957
Alignment:
| Q |
40 |
catgacagcatggaatcccgcgtgactcaaacagtttacacgaacactgaaattctaaacttgcagcatcgtatacaacctctctttcaatgcctttctc |
139 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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|
| T |
7557166 |
catgacaacatggaatcccacgtgactcaaatagtctacacgaacactgaaattctaaacttgcagcattgtatacaacctctctttcaatgcctttgtc |
7557067 |
T |
|
| Q |
140 |
acgatattttcgcaatgtataaaccatggtatcccccacacattttttgtgcttcagacttactgcaccagcctcattaatttcatctttaacttcttta |
239 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||| |||||| | || |||| || |||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
7557066 |
acgatattttcgcaatgtataaaccaaggaatcccccacac-ttttttttcctcgagacgtattgcaccagaatcaataatttcatctttaacttcttta |
7556968 |
T |
|
| Q |
240 |
aagatctctgc |
250 |
Q |
| |
|
||||||||||| |
|
|
| T |
7556967 |
aagatctctgc |
7556957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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