View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0246_low_2 (Length: 456)
Name: NF0246_low_2
Description: NF0246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0246_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 29 - 443
Target Start/End: Original strand, 3592572 - 3592986
Alignment:
| Q |
29 |
aggtactactattatatcactttagaaaaagagtaacaattaaatggcaactttaattaataaggagaacagctgcgacaatgatacaaattataaggga |
128 |
Q |
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| T |
3592572 |
aggtactactattatatcactttagaaaaagagtaacaattaaatggcaactttaattaataaggagaacagctgcgacaatgatacaaattataaggga |
3592671 |
T |
|
| Q |
129 |
acaacaaggtgtattgtttgaccatacggattcaatttaaaagccaagcaacagaagtgattacggcaacagtaaataattcgtttcacaattagaattt |
228 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3592672 |
acaacaaggtgtattttttgaccatacgaattcaatttaaaagccaagcaacagaagtgattacggcaacagtaaataattcgtttcacaattaaaattt |
3592771 |
T |
|
| Q |
229 |
aggaaaaaggggcagcacaagtaattgtattagaatcaaaaatacatgtagcagcaataggaattacggtgaccatgtaaattttaaaggaatataatat |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
3592772 |
aggaaaaaggggcagcacaagtaattgtattagaatcaaaaatacatgtagcagcaatatgaattacggtggccatgtaaattttaaaggaatataatat |
3592871 |
T |
|
| Q |
329 |
aaaaatgggtttaaaagcaaaataggcagcaaagcaacttaaccgtaaaagcaaatttagactgaattcgaaagtgcataaaaaggttttcgaaaatata |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592872 |
aaaaatgggtttaaaagcaaaataggcagcaaagcaacttaactgtaaaagcaaattttgactgaattcgaaagtgcataaaaaggttttcgaaaatata |
3592971 |
T |
|
| Q |
429 |
taattgcagcaacag |
443 |
Q |
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||||||||||||||| |
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| T |
3592972 |
taattgcagcaacag |
3592986 |
T |
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