View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0246_low_9 (Length: 266)
Name: NF0246_low_9
Description: NF0246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0246_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 10612438 - 10612255
Alignment:
| Q |
40 |
aaaataaaacacaataagcataaaatcaaatagtattgatgccaataatgaataaatatttcaacaactgcatcaatggagaaaacggctgcataattta |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
10612438 |
aaaataaaacacaataagcataaaatcaaatagtattgatgccaataatgaataaatatttcaacaactgcatcgatggagaaaacggctgcataattaa |
10612339 |
T |
|
| Q |
140 |
aatttcttaatttatccagtgattgtttcatttcagcatgaaagtaaatnnnnnnncaatcacatggttgataaaataatgatg |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10612338 |
aatttcttaatttatccagtgattgtttcatttcagcatgaaagtaaataaaaaaacaatcacatggttgataaaataatgatg |
10612255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 30984707 - 30984643
Alignment:
| Q |
40 |
aaaataaaacacaataagcataaaatcaaatagtattgatgccaataatgaataaatatttcaaca |
105 |
Q |
| |
|
||||||||||| |||| ||||||||||| |||||| || || |||||||| |||||||||||||| |
|
|
| T |
30984707 |
aaaataaaacatgataaacataaaatcaagtagtatcga-gctaataatgattaaatatttcaaca |
30984643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2106 times since January 2019
Visitors: 2396