View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0247-INSERTION-1 (Length: 518)
Name: NF0247-INSERTION-1
Description: NF0247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0247-INSERTION-1
[» ] chr5 (2 HSPs)
Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 122 - 518
Target Start/End: Original strand, 16887252 - 16887649
Alignment:
Q
122
acggacgctgaaactcacacacacaactgcaagatcttgggttcaaacgcgatgaaggtgttcagactaacaatttcagctttgtcagttgagctagacc
221
Q
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
T
16887252
acggacgctgaaactcacacacacaactgcaagatcctgggttcaaacgcgatgaaggtgttcagactaacaatctcagctttgtcagttgagctagacc
16887351
T
Q
222
tta-gcacttacatttaggttttggttctctctagagtttgttagagatggggttgttgggttctgataatgttaaaatggtggagtcttgggatatgtc
320
Q
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
16887352
ttatgcacttacatttaggttttggttctctatagagtttgttagagatggggttgttgggttctgataatgttaaaatggtggagtcttgggatatgtc
16887451
T
Q
321
taaatcaaaggggagtaagaagatgaagaaggataaagagaatgaggatgtgattgatgcgggaaaaacaaaaactgggtgttgggttgggttgagattc
420
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
16887452
taaatcaaaggggagtaagaagatgaagaaggataaagagaatgaggatgtgattgatgcgggaaaaacaaaaactgggtgttgggttgggttgagattc
16887551
T
Q
421
attggtagctgcatttcttcaagatcccaagttgatagctcagtcagtggcagtggcgcaagtacacattatggcaattactgtttcctcggaaatgt
518
Q
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
T
16887552
attggtagctgcatttcttcaagatccaaagttgatagctcagtcagtggcagtggcacaagtacacattatggtaattactgtttcctcggaaatgt
16887649
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 16887117 - 16887207
Alignment:
Q
7
actttttatctgggttgtgattttgaggtagtgggagggtatggcattgaaggtttgttgtaatgttttgaattttgatgatattaatgtg
97
Q
|||||| |||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
T
16887117
acttttcatctgggttgtgattttgaggtagtgcgagggtatgtcattgaagggttgttgtaatgttttgaattttgatgatattaatgtg
16887207
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 472
Target Start/End: Complemental strand, 25139135 - 25139055
Alignment:
Q
392
aaactgggtgttgggttgggttgagattcattggtagctgcatttcttcaagatcccaagttgatagctcagtcagtggca
472
Q
|||||||||||||| || | || || || ||||| ||||||||||||||||||||| | ||||||||||| || |||||||
T
25139135
aaactgggtgttggcttagttttaggtttattggaagctgcatttcttcaagatccaaggttgatagctctgttagtggca
25139055
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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