View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0247-INSERTION-1 (Length: 518)
Name: NF0247-INSERTION-1
Description: NF0247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0247-INSERTION-1 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 122 - 518
Target Start/End: Original strand, 16887252 - 16887649
Alignment:
| Q |
122 |
acggacgctgaaactcacacacacaactgcaagatcttgggttcaaacgcgatgaaggtgttcagactaacaatttcagctttgtcagttgagctagacc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16887252 |
acggacgctgaaactcacacacacaactgcaagatcctgggttcaaacgcgatgaaggtgttcagactaacaatctcagctttgtcagttgagctagacc |
16887351 |
T |
|
| Q |
222 |
tta-gcacttacatttaggttttggttctctctagagtttgttagagatggggttgttgggttctgataatgttaaaatggtggagtcttgggatatgtc |
320 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16887352 |
ttatgcacttacatttaggttttggttctctatagagtttgttagagatggggttgttgggttctgataatgttaaaatggtggagtcttgggatatgtc |
16887451 |
T |
|
| Q |
321 |
taaatcaaaggggagtaagaagatgaagaaggataaagagaatgaggatgtgattgatgcgggaaaaacaaaaactgggtgttgggttgggttgagattc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16887452 |
taaatcaaaggggagtaagaagatgaagaaggataaagagaatgaggatgtgattgatgcgggaaaaacaaaaactgggtgttgggttgggttgagattc |
16887551 |
T |
|
| Q |
421 |
attggtagctgcatttcttcaagatcccaagttgatagctcagtcagtggcagtggcgcaagtacacattatggcaattactgtttcctcggaaatgt |
518 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16887552 |
attggtagctgcatttcttcaagatccaaagttgatagctcagtcagtggcagtggcacaagtacacattatggtaattactgtttcctcggaaatgt |
16887649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 16887117 - 16887207
Alignment:
| Q |
7 |
actttttatctgggttgtgattttgaggtagtgggagggtatggcattgaaggtttgttgtaatgttttgaattttgatgatattaatgtg |
97 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16887117 |
acttttcatctgggttgtgattttgaggtagtgcgagggtatgtcattgaagggttgttgtaatgttttgaattttgatgatattaatgtg |
16887207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 472
Target Start/End: Complemental strand, 25139135 - 25139055
Alignment:
| Q |
392 |
aaactgggtgttgggttgggttgagattcattggtagctgcatttcttcaagatcccaagttgatagctcagtcagtggca |
472 |
Q |
| |
|
|||||||||||||| || | || || || ||||| ||||||||||||||||||||| | ||||||||||| || ||||||| |
|
|
| T |
25139135 |
aaactgggtgttggcttagttttaggtttattggaagctgcatttcttcaagatccaaggttgatagctctgttagtggca |
25139055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University