View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0247-INSERTION-3 (Length: 615)
Name: NF0247-INSERTION-3
Description: NF0247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0247-INSERTION-3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 516; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 8 - 615
Target Start/End: Original strand, 29676864 - 29677471
Alignment:
| Q |
8 |
atggttgcagatggacagctataactcagttagctcatcatggtatgctttatgttccccttggatacacctttggaagtggcatgtttgagatggatga |
107 |
Q |
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| T |
29676864 |
atggttgcagatggacagctataactcagttagctcatcatggtatgctttatgttccccttggatacacctttggaagtggcatgtttgagatggatga |
29676963 |
T |
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| Q |
108 |
ggtaaaaggaggctcggcgtatggcgctggaactttcgctggagatggaactcgtcaacctacggagctagagcttcagcaggccttttaccagggtaaa |
207 |
Q |
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| T |
29676964 |
ggtaaaaggaggctcggcgtatggcgctggaactttcgctggagatggaactcgtcaacctacggagctagagcttcagcaggccttttaccagggtaaa |
29677063 |
T |
|
| Q |
208 |
tacattgctgaaattgcaaaaaagttgaaaagttaaccttcctgcatggtaaatacttgtaaagatacaacaaacttctacatcaataaaactcttgttc |
307 |
Q |
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| T |
29677064 |
tacattgctgaaattgcaaaaaagttgaaaagttaacctttctgcatggcaaatacttgtaaagatgcaacaaacttctacatcaataaaattcttgttc |
29677163 |
T |
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| Q |
308 |
ttaacttactatccttttactaggattgtgactgcagaatccctctttctcagaaactctcaaattactctaatgcagtgaataagaattacagcattct |
407 |
Q |
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| T |
29677164 |
ttaactcactatccttttactaggatttttgctgcagaatccctctttctcataaactctcaaattactctaatgcagtgaataagaattacagcattct |
29677263 |
T |
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| Q |
408 |
agaatttgtaagtaaaatgctccgaatcagaattctgttnnnnnnnttataattgaatttcatcatacatacaaaacattaccataagnnnnnnnnntct |
507 |
Q |
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| T |
29677264 |
agaatttgtaagtaaaatgctccaaaacagaattctgttaaaaaaattataattgaatttcatcatacatacaaaacattaccataagaaaaaaaaatct |
29677363 |
T |
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| Q |
508 |
atgttgactattgactggcgttttcaagttattctgttgactattgactcataattcttttttaacttcatgtcaatttttctatttgaaaaatagtaaa |
607 |
Q |
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| T |
29677364 |
atgttgactattgactggcgttttcaagttattctgttgactattgactcataattcttttttaacttcatgtcaatttttctatttgaaaaatagtaaa |
29677463 |
T |
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| Q |
608 |
tgcaattt |
615 |
Q |
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| T |
29677464 |
tgcaattt |
29677471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 29698055 - 29698263
Alignment:
| Q |
30 |
aactcagttagctcatcatggtatgctttatgttccccttggatacacctttggaagtggcatgtttgagatggatgaggtaaaaggaggctcggcgtat |
129 |
Q |
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| T |
29698055 |
aactcagttagcttgtcatggtatgcttcttgttccccttggatacacctttggtagtggcattttttatatgtatgaggttaaaggaggcttggcctaa |
29698154 |
T |
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| Q |
130 |
ggcgctggaactttcgctggagatggaactcgtcaacctacggagctagagcttcagcaggccttttaccagggtaaatacattgctgaaattgcaaaaa |
229 |
Q |
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| T |
29698155 |
ggcgctggaactttggcaggagacggaactcgtcaacctacttagctagagcttcagcaggccttttaccagggtaaattatttgctcaaatagcaaata |
29698254 |
T |
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| Q |
230 |
agttgaaaa |
238 |
Q |
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| T |
29698255 |
agttgaaaa |
29698263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 29689874 - 29690094
Alignment:
| Q |
20 |
ggacagctataactcagttagctcatcatggtatgctttatgttccccttggatacacctttggaagtggcatgtttgagatggatgaggtaaaaggagg |
119 |
Q |
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|||||||||||||| ||||||||||||||||| || ||| |||||||||||||||||||||||| ||||||| |||||||||||||| || ||| |||| |
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| T |
29689874 |
ggacagctataacttagttagctcatcatggtgtgttttttgttccccttggatacacctttggtggtggcatttttgagatggatgatgttaaatgagg |
29689973 |
T |
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| Q |
120 |
ctcggcgtatggcgctggaactttcgctggaga-tggaactcgtcaacctacggagctagagcttcagcaggccttttaccagggtaaatacattgctga |
218 |
Q |
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| T |
29689974 |
cttggcctaaggtgctggaacttaggcaggagaccggaactcgtcagcttactgagctagagcttcagagcgcattttaccaggctaaatacattgttga |
29690073 |
T |
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| Q |
219 |
aattgcaaaaaagttgaaaag |
239 |
Q |
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| T |
29690074 |
aattgcaagaaagttgaaaag |
29690094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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