View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0247-INSERTION-5 (Length: 435)
Name: NF0247-INSERTION-5
Description: NF0247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0247-INSERTION-5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 429
Target Start/End: Complemental strand, 29189782 - 29189351
Alignment:
| Q |
8 |
atatccacttgatgtatcagctgcaaaccaagactcagctgtagaaacaccatagagacaaaataagcaaacatatactgagtttctatgaagcacggac |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29189782 |
atatccactagatgtatcagctgcaaaccaagactcagctgtagaaacaccatagagacaaaataagcaaacatatactgagtttctatgaaggacggac |
29189683 |
T |
|
| Q |
108 |
gcagacacggcatcagacacggataatttttcaaaaaattaacataattcactgtaatcataaatatgggtgtcacgccggtataagaaacaaaatatgt |
207 |
Q |
| |
|
|||||||||||| | || | ||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
29189682 |
gcagacacggcaccggatatagataatttttcaaaaaattgacataattcactgtaatcacaaatatgggtgtcatgtcggtataggaaacaaaatatgt |
29189583 |
T |
|
| Q |
208 |
gtcgtacatcgagacacaccttcaatcagaa--gtgtctatgcaacaaagatgagtttggcaaa--------atcgtgattctaatgaagtttcaaagtg |
297 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| || || |||||| ||||||||||||||| |
|
|
| T |
29189582 |
gtcgtacaccgagacacaccttcaatcagaattgtgtctatgcaacagagatgagtttggcaaaataacgacattgtaattctattgaagtttcaaagtg |
29189483 |
T |
|
| Q |
298 |
tgacttttctcaaaatcatgatggcaaagtgtgattctacaagattcactatcaatctaaatatagaccaagatcacaaacaagtagaattagatcatag |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29189482 |
tgacttttctcaaaatcatgatggcaaagtgtgattctacaagattcactatcaatctaaatatagaccaagatcacaaacaagtagaattagatcatag |
29189383 |
T |
|
| Q |
398 |
tggtgccaagtgtcatctagtagaatattctt |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
29189382 |
tggtgccaagtgtcatctagtagaatattctt |
29189351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 45730078 - 45730044
Alignment:
| Q |
221 |
acacaccttcaatcagaagtgtctatgcaacaaag |
255 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45730078 |
acacaccttcaatcagaagtgtccatgcaacaaag |
45730044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 48964041 - 48963992
Alignment:
| Q |
206 |
gtgtcgtacatcgagacacaccttcaatcagaagtgtctatgcaacaaag |
255 |
Q |
| |
|
|||||| ||| || |||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
48964041 |
gtgtcgaacaccgggacataccttcaatcagaagtgtccatgcaacaaag |
48963992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 24462242 - 24462205
Alignment:
| Q |
220 |
gacacaccttcaatcagaagtgtctatgcaacaaagat |
257 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
24462242 |
gacacgccttcaatcagaagtgtctgtgcaacaaagat |
24462205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1139 times since January 2019
Visitors: 2389