View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0247_high_7 (Length: 236)

Name: NF0247_high_7
Description: NF0247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0247_high_7
NF0247_high_7
[»] chr8 (3 HSPs)
chr8 (51-236)||(41878432-41878627)
chr8 (82-178)||(45472560-45472656)
chr8 (77-120)||(41878596-41878639)
[»] chr4 (14 HSPs)
chr4 (51-236)||(47128249-47128444)
chr4 (51-236)||(48208712-48208908)
chr4 (51-236)||(9579075-9579271)
chr4 (51-236)||(9584770-9584966)
chr4 (51-236)||(10978369-10978565)
chr4 (51-236)||(23510437-23510632)
chr4 (51-236)||(34769157-34769353)
chr4 (81-236)||(54779732-54779897)
chr4 (68-236)||(35780132-35780311)
chr4 (86-178)||(10431131-10431223)
chr4 (77-120)||(10978534-10978577)
chr4 (77-120)||(47128413-47128456)
chr4 (77-120)||(48208877-48208920)
chr4 (77-120)||(54779866-54779909)
[»] chr1 (9 HSPs)
chr1 (51-236)||(5316021-5316217)
chr1 (51-236)||(21741511-21741707)
chr1 (68-236)||(4977521-4977700)
chr1 (51-236)||(50880811-50881006)
chr1 (82-178)||(23182180-23182276)
chr1 (170-236)||(50881050-50881116)
chr1 (177-236)||(4977453-4977512)
chr1 (77-120)||(4977509-4977552)
chr1 (170-202)||(23182278-23182310)
[»] chr6 (2 HSPs)
chr6 (51-236)||(19740825-19741021)
chr6 (77-120)||(19740813-19740856)
[»] chr3 (3 HSPs)
chr3 (51-236)||(3954474-3954669)
chr3 (115-236)||(8073670-8073801)
chr3 (77-120)||(3954462-3954505)
[»] chr2 (6 HSPs)
chr2 (51-236)||(34715814-34716010)
chr2 (51-236)||(34693402-34693598)
chr2 (68-236)||(29940182-29940361)
chr2 (91-150)||(40445290-40445347)
chr2 (77-120)||(34693567-34693610)
chr2 (77-120)||(34715979-34716022)
[»] chr5 (7 HSPs)
chr5 (51-236)||(30853532-30853727)
chr5 (51-236)||(22987067-22987263)
chr5 (51-236)||(27078455-27078651)
chr5 (81-236)||(23285508-23285673)
chr5 (51-178)||(16592505-16592633)
chr5 (77-120)||(22987055-22987098)
chr5 (77-120)||(30853696-30853739)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 41878432 - 41878627
Alignment:
Q  51 accaaatcatcactgattctcaactctcaagtttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaattt 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41878432 accaaatcatcactgattctcaactctcaagtttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaattt 41878531  T
Q  151 gaatgttgaaattgttaaa----------atagagatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    |||||||||||||||||||          |||||||||||||||||||||||||||||| |||||||| ||||||| |||||| ||||||||||||    
T  41878532 gaatgttgaaattgttaaaatagagattgatagagatttgttgaatgttgaaaacaacattgtttcaattttcaatcggttttcccctttccaaaa 41878627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 45472560 - 45472656
Alignment:
Q  82 tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgttaaaatagagatt 178  Q
    |||||||  ||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||||    
T  45472560 tttcaattggttttcccctttccaaaacaacactatttggtaagtaaagaaactctctttcattaatttgaatgttgaaatctctaaaatagagatt 45472656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 41878596 - 41878639
Alignment:
Q  77 tcaagtttcaatcagttttcccctttccaaaacaacattgtttg 120  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||    
T  41878596 tcaattttcaatcggttttcccctttccaaaacaacactgtttg 41878639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 47128249 - 47128444
Alignment:
Q  51 accaaatcatcactgattctcaactctcaagtttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaattt 150  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47128249 accaaatcatcagtgattctcaactctcaagtttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaattt 47128348  T
Q  151 gaatgttgaaattgttaaa----------atagagatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||| |||          ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  47128349 gaatgttgaaattgtgaaaatagagattgatagagatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctttccaaaa 47128444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 48208712 - 48208908
Alignment:
Q  51 accaaatcatcactgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt 149  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48208712 accaaatcatcgctgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt 48208811  T
Q  150 tgaatgttgaaattgttaaa----------atagagatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||| ||||          |||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||    
T  48208812 tgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactatttcaaatttcaatcggttttcccctttccaaaa 48208908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 9579271 - 9579075
Alignment:
Q  51 accaaatcatcactgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt 149  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9579271 accaaatcatcactgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt 9579172  T
Q  150 tgaatgttgaaattgttaaaataga----------gatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||  |||||||||          ||||||||||||||||||||||||||| |||||||||||||| |||||| || |||||||||    
T  9579171 tgaatgttgaaattactaaaatagagattgatagagatttgttgaatgttgaaaacaacactatttcaaatttcaatcggttttcccatttccaaaa 9579075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 9584966 - 9584770
Alignment:
Q  51 accaaatcatcactgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt 149  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9584966 accaaatcatcactgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt 9584867  T
Q  150 tgaatgttgaaattgttaaaataga----------gatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||  |||||||||          ||||||||||||||||||||||||||| |||||||||||||| |||||| || |||||||||    
T  9584866 tgaatgttgaaattactaaaatagagattgatagagatttgttgaatgttgaaaacaacactatttcaaatttcaatcggttttcccatttccaaaa 9584770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 10978369 - 10978565
Alignment:
Q  51 accaaatcatcactgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt 149  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  10978369 accaaatcatcactgattctcaactctcaaggtttcaatcagtttccccctttccaaagcaacactgtttggtaagtaaataaactctctttcattaatt 10978468  T
Q  150 tgaatgttgaaattgttaaa----------atagagatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||| ||||          |||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  10978469 tgaatgttgaaattgctaaaatagagattgatagagattttttgaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctttccaaaa 10978565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 23510632 - 23510437
Alignment:
Q  51 accaaatcatcactgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt 149  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  23510632 accaaatcatcactgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggttagtaaataaactctctttcattaatt 23510533  T
Q  150 tgaatgttgaaattgttaaaataga----------gatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||  |||||||||          |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  23510532 tgaatgttgaaatttctaaaatagagattgatagagatttgttgaatgttgaaaacaacactgtttcaaatttcaatcgg-ttttccctttccaaaa 23510437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 34769353 - 34769157
Alignment:
Q  51 accaaatcatcactgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt 149  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34769353 accaaaacatcactgattctcaactctcaaggtttcaatcagtttacccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt 34769254  T
Q  150 tgaatgttgaaattgttaaaatagag----------atttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||| ||||||||||          ||||||||||||||||||||| ||||||||||||||||||| |||||| |  |||||||||    
T  34769253 tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaa 34769157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 54779732 - 54779897
Alignment:
Q  81 gtttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgttaaa----------a 170  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||          |    
T  54779732 gtttcaatcagttttcccctttccataacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattga 54779831  T
Q  171 tagagatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||    
T  54779832 tagagatttgttgaatgttgaaaacaacattgtttcaaatttcaatcggttttcccctttccaaaa 54779897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 35780311 - 35780132
Alignment:
Q  68 tctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgtt 166  Q
    ||||| |||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  35780311 tctcacctctcaaggtttcaatcggtttttccctttccaaaacaacactgtttggtaagtaaataaactctctttcattagtttgaatgttgaaattgct 35780212  T
Q  167 aaaataga----------gatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||          ||||||||||||||||||||||||||||||| |||||||||| | |||| ||||||||||||    
T  35780211 aaaatagagattgatagagatttgttgaatgttgaaaacaacactgttttaaatttcaatcgattttcccctttccaaaa 35780132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 10431223 - 10431131
Alignment:
Q  86 aatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgttaaaatagagatt 178  Q
    |||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10431223 aatcagtttttcccttttcaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgatgaaattgttaaaatagagatt 10431131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 10978534 - 10978577
Alignment:
Q  77 tcaagtttcaatcagttttcccctttccaaaacaacattgtttg 120  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||    
T  10978534 tcaaatttcaatcggttttcccctttccaaaacaacactgtttg 10978577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 47128413 - 47128456
Alignment:
Q  77 tcaagtttcaatcagttttcccctttccaaaacaacattgtttg 120  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||    
T  47128413 tcaaatttcaatcggttttcccctttccaaaacaacactgtttg 47128456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 48208877 - 48208920
Alignment:
Q  77 tcaagtttcaatcagttttcccctttccaaaacaacattgtttg 120  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||    
T  48208877 tcaaatttcaatcggttttcccctttccaaaacaacactgtttg 48208920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 54779866 - 54779909
Alignment:
Q  77 tcaagtttcaatcagttttcccctttccaaaacaacattgtttg 120  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||    
T  54779866 tcaaatttcaatcggttttcccctttccaaaacaacactgtttg 54779909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 5316021 - 5316217
Alignment:
Q  51 accaaatcatcactgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt 149  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5316021 accaaatcatcactgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt 5316120  T
Q  150 tgaatgttgaaattgttaaaatagag----------atttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||| ||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5316121 tgaatgttgaaattgctaaaatagagattgatataaatttgttgaatgttgaaaacaacactgtttcaaatttcaattggttttcccctttccaaaa 5316217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 21741707 - 21741511
Alignment:
Q  51 accaaatcatcactgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt 149  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21741707 accaaatcatcactgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt 21741608  T
Q  150 tgaatgttgaaattgttaaaatagag----------atttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||| ||||||| ||          ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||    
T  21741607 tgaatgttgaaattgctaaaataaagattgataaaaatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttccccttttcaaaa 21741511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 4977700 - 4977521
Alignment:
Q  68 tctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgtt 166  Q
    |||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  4977700 tctcaactctcaaggtttcaattggttttcccctttccaaaacaacattgtttggtaagtaaagaaactctctttcattaatttgaatgttgaaattgct 4977601  T
Q  167 aaaataga----------gatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||          |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||    
T  4977600 aaaatagagattgatagagatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctgtccaaaa 4977521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 50880811 - 50881006
Alignment:
Q  51 accaaatcatcactgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt 149  Q
    ||||||| | ||||||||||||||||||||| ||||||| |||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||||||    
T  50880811 accaaataaccactgattctcaactctcaaggtttcaataagtttttccctttccaaaacaa-actgtttggtaagtaaataaactgtctttcattaatt 50880909  T
Q  150 tgaatgttgaaattgttaaaataga----------gatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||| |||||||||          |||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||    
T  50880910 tgaatgttgaaattgctaaaatagagattgatagtgatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttccccttttcaaaa 50881006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 23182180 - 23182276
Alignment:
Q  82 tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgttaaaatagagatt 178  Q
    |||||||  |||||||||||||||| |||||| | ||||||||||||| ||||||||||| ||||||||||||||||||||   |||||||||||||    
T  23182180 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaactctctttaattaatttgaatgttgaaatccctaaaatagagatt 23182276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 50881050 - 50881116
Alignment:
Q  170 atagagatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||    
T  50881050 atagtgatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttccccttttcaaaa 50881116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 4977512 - 4977453
Alignment:
Q  177 tttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||    
T  4977512 tttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctgtccaaaa 4977453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 4977552 - 4977509
Alignment:
Q  77 tcaagtttcaatcagttttcccctttccaaaacaacattgtttg 120  Q
    |||| |||||||| |||||||||| |||||||||||||||||||    
T  4977552 tcaaatttcaatcggttttcccctgtccaaaacaacattgtttg 4977509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 23182278 - 23182310
Alignment:
Q  170 atagagatttgttgaatgttgaaaacaacactg 202  Q
    |||||||||||||||||||||| ||||||||||    
T  23182278 atagagatttgttgaatgttgagaacaacactg 23182310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 19741021 - 19740825
Alignment:
Q  51 accaaatcatcactgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt 149  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19741021 accaaatcatcactgattctcaactctcaaggtttcaatcagtttttccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt 19740922  T
Q  150 tgaatgttgaaattgttaaaatag----------agatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  19740921 tgaatgttgaaattgttaaaatagagatagatagagatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctttccaaaa 19740825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 19740856 - 19740813
Alignment:
Q  77 tcaagtttcaatcagttttcccctttccaaaacaacattgtttg 120  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||    
T  19740856 tcaaatttcaatcggttttcccctttccaaaacaacactgtttg 19740813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 3954669 - 3954474
Alignment:
Q  51 accaaatcatcactgattctcaactctcaagtttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaattt 150  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3954669 accaaatcatcagtgattctcaactctcaagtttcaatcagttttcccatttccaaaacaacactgtttggtaagtaaataaactctctttcattaattt 3954570  T
Q  151 gaatgttgaaattgttaaaataga----------gatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||||||||||||          |||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||    
T  3954569 gaatgttgaaattgttaaaatagagattgatagagatttgttgaatgttgaaaacaaccctgtttcaaatttcaatcggttttcccctttccaaaa 3954474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 8073801 - 8073670
Alignment:
Q  115 tgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgttaaaataga----------gatttgttgaatgttgaaaacaacactgtt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||          ||||||||||||||||||||||||||||||    
T  8073801 tgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactgtt 8073702  T
Q  205 tcaaatttcaattggtttttccctttccaaaa 236  Q
    |||||||||||| |||||| ||||||| ||||    
T  8073701 tcaaatttcaatcggttttcccctttctaaaa 8073670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 3954505 - 3954462
Alignment:
Q  77 tcaagtttcaatcagttttcccctttccaaaacaacattgtttg 120  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||    
T  3954505 tcaaatttcaatcggttttcccctttccaaaacaacactgtttg 3954462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 34715814 - 34716010
Alignment:
Q  51 accaaatcatcactgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt 149  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34715814 accaaatcatcactgattctcaactctcaaggtttaaatcagtttttccctttccaaaacaacattgtttggtaagtaaataaactttctttcattaatt 34715913  T
Q  150 tgaatgttgaaattgttaaa----------atagagatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||| ||||          ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  34715914 tgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctttccaaaa 34716010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 34693402 - 34693598
Alignment:
Q  51 accaaatcatcactgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt 149  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34693402 accaaatcatcactgattctcaactctcaaggtttaaatcagtttttccctttccaaaacaacattgtttggtaagtaaataaactttctttcattaatt 34693501  T
Q  150 tgaatgttgaaattgttaaa----------atagagatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||| ||||          |||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  34693502 tgaatgttgaaattgctaaaatagagattgatagagatttattgaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctttccaaaa 34693598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 29940361 - 29940182
Alignment:
Q  68 tctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgtt 166  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  29940361 tctcaactctcaaggtttcaatcaattttcccctttccaaaacaacactgtctggtaagtaaataaactctctttcattaatttgaatgttgaaattgct 29940262  T
Q  167 aaaataga----------gatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||          |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  29940261 aaaatagagattgatagagatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctttccaaaa 29940182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 40445290 - 40445347
Alignment:
Q  91 gttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaattt 150  Q
    ||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||    
T  40445290 gttttcccctttccaaaa--acattgtttggtaagtaaataacctctctttcattaattt 40445347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 34693567 - 34693610
Alignment:
Q  77 tcaagtttcaatcagttttcccctttccaaaacaacattgtttg 120  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||    
T  34693567 tcaaatttcaatcggttttcccctttccaaaacaacactgtttg 34693610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 34715979 - 34716022
Alignment:
Q  77 tcaagtttcaatcagttttcccctttccaaaacaacattgtttg 120  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||    
T  34715979 tcaaatttcaatcggttttcccctttccaaaacaacactgtttg 34716022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 30853532 - 30853727
Alignment:
Q  51 accaaatcatcactgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt 149  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||    
T  30853532 accaaatcatcattgattctcaactctcaagatttcaatcagttttcccctttccaaaacaatagtgtttggtaagtaaataaactctctttaattaatt 30853631  T
Q  150 tgaatgttgaaattgttaaa---------atagagatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||| ||||         |||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||    
T  30853632 tgaatgttgaaattgctaaatagagattgatagagatttgttgaatgttgaaaacaacactgtgtcaaatttcaatcggttttcccctttccaaaa 30853727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 22987263 - 22987067
Alignment:
Q  51 accaaatcatcactgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt 149  Q
    |||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  22987263 accaaatcatcattcattctcaactctcaaggtttcaatcagttttcccctttccaaaacaatactgtttggtaagtaaataaactctctttcattaatt 22987164  T
Q  150 tgaatgttgaaattgttaaaataga----------gatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||| |||||||||          ||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  22987163 tgaatgttgaaattgctaaaatagagattgatagagatttgtagaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctttccaaaa 22987067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 27078455 - 27078651
Alignment:
Q  51 accaaatcatcactgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt 149  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  27078455 accaaatcatcactgattctcaactctcaagatttcaatcagttttcccctttccaaaacaacacagtttgataagtaaataaactctctttcattaatt 27078554  T
Q  150 tgaatgttgaaattgttaaa----------atagagatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
    ||||||||||||||| ||||          |||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||    
T  27078555 tgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactgtttcaaattacaatcggttttccccttttcaaaa 27078651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 81 - 236
Target Start/End: Complemental strand, 23285673 - 23285508
Alignment:
Q  81 gtttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgttaaaataga------ 174  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||          
T  23285673 gtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattga 23285574  T
Q  175 ----gatttgttgaatgttgaaaacaacactgtttcaaatttcaattggtttttccctttccaaaa 236  Q
        |||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||    
T  23285573 tagagatttgttgaatgttgaaaacaacactgtttcaaatttcaatcgattttcccctttccaaaa 23285508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 51 - 178
Target Start/End: Complemental strand, 16592633 - 16592505
Alignment:
Q  51 accaaatcatcactgattctcaactctcaa-gtttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt 149  Q
    |||||||||||| | ||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  16592633 accaaatcatcaattattctcaactctcaaagtttcaatcagttttccccttttcaaaacaacactgtttggtaagtaaataaactctctttcattaatt 16592534  T
Q  150 tgaatgttgaaattgttaaaatagagatt 178  Q
    ||||||||||||||| |||||||||||||    
T  16592533 tgaatgttgaaattgctaaaatagagatt 16592505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 22987098 - 22987055
Alignment:
Q  77 tcaagtttcaatcagttttcccctttccaaaacaacattgtttg 120  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||    
T  22987098 tcaaatttcaatcggttttcccctttccaaaacaacactgtttg 22987055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 30853696 - 30853739
Alignment:
Q  77 tcaagtttcaatcagttttcccctttccaaaacaacattgtttg 120  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||    
T  30853696 tcaaatttcaatcggttttcccctttccaaaacaacactgtttg 30853739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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