View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0247_low_3 (Length: 258)
Name: NF0247_low_3
Description: NF0247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0247_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 49082847 - 49083057
Alignment:
| Q |
25 |
acagattatcatgcctcctcaaaacataacatttccccagaataaacttgatgttgctgcagaaaacaatgctgcaagcaatcattctagtggttccgtg |
124 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49082847 |
acagattaccatgcctcctcaaaatataacatttccacagaataaacttgatgttgctgcagaaaacaatgctgcaagcaatcattctagtggttctgtg |
49082946 |
T |
|
| Q |
125 |
gcttccacacacaaaaatattgaatgcagtgnnnnnnntagtgagcctcatgtaagttttgcctatgcacgccatctaaatttcactgaagcagtgtaat |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49082947 |
gcttccacacacaaaaatattgaatgcagtgaaaaaaatagtgagcctcatgtaagttttgcctatgcacgccatctaaatttcactgaagcagtgtaat |
49083046 |
T |
|
| Q |
225 |
aggattgttag |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
49083047 |
aggattgttag |
49083057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1491 times since January 2019
Visitors: 2391