View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0247_low_8 (Length: 237)
Name: NF0247_low_8
Description: NF0247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0247_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 243123 - 242964
Alignment:
| Q |
31 |
aaatccaacttgttactacatctttttatttgcttttaataatgattataaaaaatgaactgtgatatgttaccattatgtcgtaaataaccatagcgta |
130 |
Q |
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| T |
243123 |
aaatccaacttgttactacatctttttatttgcttttaataatgattataaaaaatgaactgtgatatgttaccattatgtcgtaaataaccatagcgta |
243024 |
T |
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| Q |
131 |
agtgctagcaagagctatgtttcccattgaagttaaaacactccaaactttatctgcaac |
190 |
Q |
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| T |
243023 |
agtgctagcaagagctatgtttcccattgaagttaaaacactccaaactttatctgcaac |
242964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 188
Target Start/End: Original strand, 222181 - 222301
Alignment:
| Q |
68 |
aataatgattataaaaaatgaactgtgatatgttaccattatgtcgtaaataaccatagcgtaagtgctagcaagagctatgtttcccattgaagttaaa |
167 |
Q |
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| T |
222181 |
aataatgattatagtaagtgaattgtggtagtttaccattatgtcgtaaataacagtagcataagtgctagcaagagctatgtttcccattgaagtgcaa |
222280 |
T |
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| Q |
168 |
acactccaaactttatctgca |
188 |
Q |
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| T |
222281 |
acacgccacactttctctgca |
222301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 12030141 - 12030211
Alignment:
| Q |
91 |
tgtgatatgttaccattatgtcgtaaataaccatagcgtaagtgctagcaagagctatgtttcccattgaa |
161 |
Q |
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| T |
12030141 |
tgtgattttttaccattatgtcgtaaataacagtagcataagtgcaagcaagtgctatgtttcccattgaa |
12030211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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