View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0248_low_2 (Length: 392)

Name: NF0248_low_2
Description: NF0248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0248_low_2
NF0248_low_2
[»] chr4 (3 HSPs)
chr4 (29-179)||(28011242-28011397)
chr4 (214-381)||(28011399-28011566)
chr4 (233-324)||(29897176-29897265)
[»] chr5 (2 HSPs)
chr5 (130-381)||(25943374-25943623)
chr5 (136-186)||(34235572-34235622)
[»] chr6 (3 HSPs)
chr6 (130-324)||(32984617-32984809)
chr6 (130-324)||(17866445-17866635)
chr6 (130-324)||(17875999-17876189)
[»] chr3 (2 HSPs)
chr3 (130-324)||(25535533-25535725)
chr3 (130-324)||(14307940-14308132)
[»] chr2 (6 HSPs)
chr2 (198-324)||(39613787-39613911)
chr2 (144-324)||(25416235-25416415)
chr2 (198-352)||(23151948-23152104)
chr2 (198-352)||(23563205-23563361)
chr2 (291-347)||(27761450-27761505)
chr2 (130-178)||(39613739-39613787)
[»] chr7 (4 HSPs)
chr7 (130-309)||(13827872-13828049)
chr7 (291-381)||(17817910-17817999)
chr7 (205-246)||(2092698-2092739)
chr7 (292-324)||(2092631-2092663)
[»] chr8 (2 HSPs)
chr8 (130-270)||(13303213-13303352)
chr8 (219-324)||(32135827-32135930)
[»] scaffold0735 (1 HSPs)
scaffold0735 (199-320)||(2521-2639)
[»] chr1 (2 HSPs)
chr1 (199-320)||(42880401-42880519)
chr1 (205-269)||(18283960-18284024)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 28011242 - 28011397
Alignment:
Q  29 tgatcatttgtcaagtgtagttggctcagctaca-ttaagtgtagttcttgacagagcatcaacgaaattcatgtaagttcggattataaccttgggagg 127  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  28011242 tgatcatttgtcaactgtagttggctcagctacacttaagtgtagttcttgacagagcatcaacgaaattcatgtaagttcggattataatcttggaagg 28011341  T
Q  128 tga----ggtttctaggaatattggttaatttttgagagtttagtgttgttgataa 179  Q
    |||    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28011342 tgaattcggtttctaggaatattggttaatttttgagagtttagcgttgttgataa 28011397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 214 - 381
Target Start/End: Original strand, 28011399 - 28011566
Alignment:
Q  214 ggaaaaataaaagagtaaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcg 313  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| ||||||||  ||| ||| ||||||||| | ||||| ||||||    
T  28011399 ggaaaaataaatgagtaagggaagaagaaaagaacacaggacaatttataatggtttccctctaaatcttaaggtcaatccactcacatcacatcccgcg 28011498  T
Q  314 aaggaattcaccacgcaaagaatctttgttacaaagcaacattaatctaaaggtcccctaacagtatt 381  Q
    ||||| || |||| | |||||||||||||||||||||||| ||||||  |||| ||||||||| ||||    
T  28011499 aaggactttaccatgtaaagaatctttgttacaaagcaaccttaatcccaaggccccctaacaatatt 28011566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 29897265 - 29897176
Alignment:
Q  233 ggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaaggaattcac 324  Q
    |||||||||||||| |||| || |||| |||||||||| ||||||||  | ||||| | |||||||| ||||||||| ||||||||||||||    
T  29897265 ggaagaagaaaaga-cacaagagaatt-atagtggtttccctctaaacctaagggtcagtccactccattcacaccctgcgaaggaattcac 29897176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 130 - 381
Target Start/End: Complemental strand, 25943623 - 25943374
Alignment:
Q  130 aggtttctaggaatattggttaatttttgagagtttagtgttgttgataattttt-cctgtaaataatgatgatggtatgaatgcggaaaaataaaagag 228  Q
    |||||||||| ||||||||| ||||||| ||||||| | ||||||||| |||||| || |||||||||||||| |||||||||||||||||| |||||||    
T  25943623 aggtttctagcaatattggtcaatttttaagagtttcgagttgttgattattttttccggtaaataatgatgaaggtatgaatgcggaaaaagaaaagag 25943524  T
Q  229 taaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaaggaattcaccacg 328  Q
    ||| ||||||||||||| ||||| ||  | |||||||||||  ||||||||  ||| || || ||||||||||||||||||||||||||| ||||| | |    
T  25943523 taagggaagaagaaaag-acacaaga-gagttatagtggttcccctctaaaccttaagg-tactccactcccttcacaccccgcgaaggatttcactatg 25943427  T
Q  329 caaagaatctttgttacaaagcaacattaatctaaaggtcccctaacagtatt 381  Q
     |||||||||||||||||||| ||| ||||||  || | ||||||||| ||||    
T  25943426 taaagaatctttgttacaaagtaactttaatcccaaaggcccctaacaatatt 25943374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 34235622 - 34235572
Alignment:
Q  136 ctaggaatattggttaatttttgagagtttagtgttgttgataatttttcc 186  Q
    |||||||||||||||||||||||  ||||||| ||| ||||||||||||||    
T  34235622 ctaggaatattggttaatttttgcaagtttagcgttcttgataatttttcc 34235572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 130 - 324
Target Start/End: Complemental strand, 32984809 - 32984617
Alignment:
Q  130 aggtttctaggaatattggttaatttttgagagtttagtgttgttgataatttttcctgtaaataatgatgatggtatgaatgcggaaaaataaaagagt 229  Q
    |||||||| || |||||||||||||||||  ||||||||||| |||||||||||||| | |  | || |||| ||||||||||||||||||||||||| |    
T  32984809 aggtttctcggtatattggttaatttttgtaagtttagtgttcttgataatttttccggaatcttattatgaaggtatgaatgcggaaaaataaaagaat 32984710  T
Q  230 aaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaaggaattcac 324  Q
    || ||||||| |||||| |||| || |||| |||||||||  ||||||||  ||||||| | |||||||||||| ||||||||||||||||||||    
T  32984709 aagggaagaaaaaaaga-cacaagagaatt-atagtggttcccctctaaaccttagggtcagtccactcccttcgcaccccgcgaaggaattcac 32984617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 130 - 324
Target Start/End: Complemental strand, 17866635 - 17866445
Alignment:
Q  130 aggtttctaggaatattggttaatttttgagagtttagtgttgttgataatttttcctgtaaataatgatgatggtatgaatgcggaaaaataaaagagt 229  Q
    |||||||||||||||||||||||||||||  ||||||| ||| ||||| |||||||| | || | |  |||| ||||||||   ||||||||||||||||    
T  17866635 aggtttctaggaatattggttaatttttgcaagtttagcgttcttgatcatttttccagaaacttaatatgaaggtatgaa--aggaaaaataaaagagt 17866538  T
Q  230 aaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaaggaattcac 324  Q
    || ||||||||||||| ||||| || || |||||||||||  ||||||||  ||||||| | ||||||||||||||||||| ||||||| |||||    
T  17866537 aagggaagaagaaaag-acacaagagaa-ttatagtggttcccctctaaaccttagggtcagtccactcccttcacaccccacgaaggatttcac 17866445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 130 - 324
Target Start/End: Complemental strand, 17876189 - 17875999
Alignment:
Q  130 aggtttctaggaatattggttaatttttgagagtttagtgttgttgataatttttcctgtaaataatgatgatggtatgaatgcggaaaaataaaagagt 229  Q
    |||||||||||||||||||||||||||||  ||||||| ||| ||||| |||||||| | || | |  |||| ||||||||   ||||||||||||||||    
T  17876189 aggtttctaggaatattggttaatttttgcaagtttagcgttcttgatcatttttccagaaacttaatatgaaggtatgaa--aggaaaaataaaagagt 17876092  T
Q  230 aaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaaggaattcac 324  Q
    || ||||||||||||| ||||| || || |||||||||||  ||||||||  ||||||| | ||||||||||||||||||| ||||||| |||||    
T  17876091 aagggaagaagaaaag-acacaagagaa-ttatagtggttcccctctaaaccttagggtcagtccactcccttcacaccccacgaaggatttcac 17875999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 130 - 324
Target Start/End: Original strand, 25535533 - 25535725
Alignment:
Q  130 aggtttctaggaatattggttaatttttgagagtttagtgttgttgataatttttcctgtaaataatgatgatggtatgaatgcggaaaaataaaagagt 229  Q
    ||||||| |||||||||||||||||||||  ||||||| ||| |||||||||||||  | || | |  |||| |||||||||| ||||||||||||||||    
T  25535533 aggtttccaggaatattggttaatttttgcaagtttagcgttcttgataatttttctggaaacttaatatgaaggtatgaatgaggaaaaataaaagagt 25535632  T
Q  230 aaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaaggaattcac 324  Q
    || ||||||| |||||| |||| || |||| |||||||||  ||||||||  ||||||| | |||||||||||||||||||||||||||||||||    
T  25535633 aagggaagaaaaaaaga-cacaagagaatt-atagtggttcccctctaaaccttagggtcagtccactcccttcacaccccgcgaaggaattcac 25535725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 130 - 324
Target Start/End: Original strand, 14307940 - 14308132
Alignment:
Q  130 aggtttctaggaatatt-ggttaatttttgagagtttagtgttgttgataatttttcctgtaaataatgatgatggtatgaatgcggaaaaataaaagag 228  Q
    ||||||||||||||||| ||| ||||| ||  ||||| | |||||||||||||||||| |||||||||||||| | ||||||| ||||||||||||||||    
T  14307940 aggtttctaggaatatttggtcaatttatgcaagtttcgcgttgttgataatttttccggtaaataatgatgaag-tatgaatacggaaaaataaaagag 14308038  T
Q  229 taaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaaggaattcac 324  Q
    ||| ||||||||||||| ||| | || || |||||||| ||  ||||||||  ||||||| | |||||||||||||||||| |||||||| |||||    
T  14308039 taagggaagaagaaaag-acaaaagagaa-ttatagtgattcccctctaaatcttagggtcagtccactcccttcacaccctgcgaaggatttcac 14308132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 198 - 324
Target Start/End: Original strand, 39613787 - 39613911
Alignment:
Q  198 atgatggtatgaatgcggaaaaataaaagagtaaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccact 297  Q
    |||| ||||||||||||||||||||||||||||| | |||||||||||| |||| || |||| |||||||||  ||||||||  ||||||| | ||||||    
T  39613787 atgaaggtatgaatgcggaaaaataaaagagtaaggaaagaagaaaaga-cacaagagaatt-atagtggttcccctctaaatcttagggtcagtccact 39613884  T
Q  298 cccttcacaccccgcgaaggaattcac 324  Q
    |||||||||||||||||||||||||||    
T  39613885 cccttcacaccccgcgaaggaattcac 39613911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 144 - 324
Target Start/End: Original strand, 25416235 - 25416415
Alignment:
Q  144 attggttaatttttgagagtttagtgttgttgataatttttcctgtaaataatgatgatggtat--gaatgcggaaaaataaaagagtaaaggaagaaga 241  Q
    |||||||||||||    ||||||| || ||||||||||||||| |||||||||||||| |||||  ||||| |||||||||||||||||| |||||||||    
T  25416235 attggttaattttacttagtttagcgtagttgataatttttccggtaaataatgatgaaggtatatgaatgtggaaaaataaaagagtaagggaagaaga 25416334  T
Q  242 aaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaaggaattcac 324  Q
    |||| ||||| || || ||||| |||||  ||||||||  | ||||| | | |||| |||||||| ||||||||| |||||||    
T  25416335 aaag-acacaagataa-ttataatggttcccctctaaacctcagggtcagtacacttccttcacatcccgcgaagaaattcac 25416415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 352
Target Start/End: Original strand, 23151948 - 23152104
Alignment:
Q  198 atgatggtatgaatgcggaaaaataaaagagtaaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccact 297  Q
    |||| |||||||||||||||||||||||| || | ||||| |||||||||  || |||| ||||| ||||||  ||||||||  | |||||  |||||||    
T  23151948 atgaaggtatgaatgcggaaaaataaaagtgt-agggaag-agaaaagaatgcaagacagtttatcgtggttcccctctaaacataagggtacatccact 23152045  T
Q  298 cccttcacaccccgcgaagga----attcaccacgcaaagaatctttgttacaaagcaa 352  Q
    ||| |||||||  | ||||||     ||||| | | |||||||||||||||||||||||    
T  23152046 cccctcacaccatgtgaaggatttttttcactatgtaaagaatctttgttacaaagcaa 23152104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 352
Target Start/End: Original strand, 23563205 - 23563361
Alignment:
Q  198 atgatggtatgaatgcggaaaaataaaagagtaaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccact 297  Q
    |||| |||||||||||||||||||||||| || | ||||| |||||||||  || |||| ||||| ||||||  ||||||||  | |||||  |||||||    
T  23563205 atgaaggtatgaatgcggaaaaataaaagtgt-agggaag-agaaaagaatgcaagacagtttatcgtggttcccctctaaacataagggtacatccact 23563302  T
Q  298 cccttcacaccccgcgaagga----attcaccacgcaaagaatctttgttacaaagcaa 352  Q
    ||| |||||||  | ||||||     ||||| | | |||||||||||||||||||||||    
T  23563303 cccctcacaccatgtgaaggatttttttcactatgtaaagaatctttgttacaaagcaa 23563361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 27761505 - 27761450
Alignment:
Q  291 atccactcccttcacaccccgcgaaggaattcaccacgcaaagaatctttgttacaa 347  Q
    ||||||||| |||||||||||||||||||||||||| |   ||||||||||||||||    
T  27761505 atccactccattcacaccccgcgaaggaattcaccatg-ttagaatctttgttacaa 27761450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 39613739 - 39613787
Alignment:
Q  130 aggtttctaggaatattggttaatttttgagagtttagtgttgttgata 178  Q
    |||||||||||||||||||||||||||||  ||||||| ||| ||||||    
T  39613739 aggtttctaggaatattggttaatttttgtaagtttagcgttcttgata 39613787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 130 - 309
Target Start/End: Complemental strand, 13828049 - 13827872
Alignment:
Q  130 aggtttctaggaatattggttaatttttgagagtttagtgttgttgataatttttcctgtaaataatgatgatggtatgaatgcggaaaaataaaagagt 229  Q
    |||||| ||||||||||||||||||||||  ||||||| ||| |||||||||||| | | || | |  |||| |||||||||||||||||||||||||||    
T  13828049 aggtttttaggaatattggttaatttttgcaagtttagcgttcttgataattttttcggaaacttaatatgaaggtatgaatgcggaaaaataaaagagt 13827950  T
Q  230 aaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccc 309  Q
    || ||||||||||||| ||||| || || |||||||||||  ||||||||  | | ||  | ||||||||||||||||||    
T  13827949 aagggaagaagaaaag-acacaagagaa-ttatagtggttcccctctaaacctcaaggccagtccactcccttcacaccc 13827872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 381
Target Start/End: Complemental strand, 17817999 - 17817910
Alignment:
Q  291 atccactcccttcacaccccgcgaaggaattcaccacgcaaagaatctttgttacaaagcaacattaatctaaaggtcccctaacagtatt 381  Q
    ||||||||||||||||||||| |||||||||||| | |  |||||||||||| |||||||||| ||||||  ||| |||||||||| ||||    
T  17817999 atccactcccttcacaccccgtgaaggaattcactatg-taagaatctttgtcacaaagcaaccttaatcccaagatcccctaacaatatt 17817910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 2092739 - 2092698
Alignment:
Q  205 tatgaatgcggaaaaataaaagagtaaaggaagaagaaaaga 246  Q
    |||||||| |||||||||||||||||| ||||||||||||||    
T  2092739 tatgaatgtggaaaaataaaagagtaagggaagaagaaaaga 2092698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 2092663 - 2092631
Alignment:
Q  292 tccactcccttcacaccccgcgaaggaattcac 324  Q
    ||||||||||||||||||| |||||||||||||    
T  2092663 tccactcccttcacaccccacgaaggaattcac 2092631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 130 - 270
Target Start/End: Complemental strand, 13303352 - 13303213
Alignment:
Q  130 aggtttctaggaatattggttaatttttgagagtttagtgttgttgataatttttcctgtaaataatgatgatggtatgaatgcggaaaaataaaagagt 229  Q
    |||||| ||||| ||||||| |||||||||  ||||| |||| ||| || ||||||| | ||||| |||||| |||||||||||| ||||||||||| ||    
T  13303352 aggtttgtaggattattggtaaatttttgaaggtttaatgttcttgtta-tttttccggaaaatattgatgaaggtatgaatgcgaaaaaataaaagtgt 13303254  T
Q  230 aaaggaagaagaaaagaacacaggacaatttatagtggttt 270  Q
    || |||||||||||| |||| | || ||||||| |||||||    
T  13303253 aagggaagaagaaaataacaaaagataatttatcgtggttt 13303213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 32135930 - 32135827
Alignment:
Q  219 aataaaagagtaaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaagga 318  Q
    ||||||||||||| ||||||| |||||| || | || | ||||||||||||  ||||||||  |||||||   |||||||||||||||||||||||||||    
T  32135930 aataaaagagtaagggaagaa-aaaaga-caaaagagagtttatagtggttcccctctaaaccttagggtcggtccactcccttcacaccccgcgaagga 32135833  T
Q  319 attcac 324  Q
    ||||||    
T  32135832 attcac 32135827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 320
Target Start/End: Original strand, 2521 - 2639
Alignment:
Q  199 tgatggtatgaatgcggaaaaataaaagagtaaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactc 298  Q
    |||||||||||||  ||||||||||||||||||  ||||| ||||| |||||  ||||||||||||| ||| |||||||||  ||||||| ||||||| |    
T  2521 tgatggtatgaatatggaaaaataaaagagtaagagaaga-gaaaaaaacac--gacaatttatagtagttctcctctaaaccttagggtcaatccaccc 2617  T
Q  299 ccttcacaccccgcgaaggaat 320  Q
    |||||||| |||| ||||||||    
T  2618 ccttcacatcccgtgaaggaat 2639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 320
Target Start/End: Complemental strand, 42880519 - 42880401
Alignment:
Q  199 tgatggtatgaatgcggaaaaataaaagagtaaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactc 298  Q
    |||||||||||||  ||||||||||||||||||  ||||| ||||| |||||  ||||||||||||| ||| |||||||||  ||||||| ||||||| |    
T  42880519 tgatggtatgaatatggaaaaataaaagagtaagagaaga-gaaaaaaacac--gacaatttatagtagttctcctctaaaccttagggtcaatccaccc 42880423  T
Q  299 ccttcacaccccgcgaaggaat 320  Q
    |||||||| |||| ||||||||    
T  42880422 ccttcacatcccgtgaaggaat 42880401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 18284024 - 18283960
Alignment:
Q  205 tatgaatgcggaaaaataaaagagtaaaggaagaagaaaagaacacaggacaatttatagtggtt 269  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| ||||||    
T  18284024 tatgaatgcggacaaataaaagagtaagggaagaagaaaagaacacaagacaatttatcgtggtt 18283960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2005 times since January 2019
Visitors: 2396