View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0248_low_3 (Length: 272)
Name: NF0248_low_3
Description: NF0248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0248_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 33 - 228
Target Start/End: Complemental strand, 7173648 - 7173454
Alignment:
| Q |
33 |
cacagaccagtaataggttgttctttgttcacaataataccctttcccacataaattcttattagcctcctcagatctacaatcttcctttcaacttcct |
132 |
Q |
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| T |
7173648 |
cacagaacagtaataggttgttctttgttcacaataataccctttcc-acataaattcttattagcctcctcagatctacaatcttcctttcaacttcct |
7173550 |
T |
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| Q |
133 |
tcttgctaatattcttaaagtaaacaagacacactcataaattttagcaccttcctcaacatccgctagactctcaccaacaataatcgtgtctct |
228 |
Q |
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| T |
7173549 |
tcttgctaatattcttaaagtaaacaagacacactcataaattttagcaccttcctcaacatccgctagactctcaccaacaataatcgtgtctct |
7173454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 47371138 - 47371066
Alignment:
| Q |
77 |
tcccacataaattcttattagcctcctcagatctacaatcttcctttcaacttccttcttgctaatattctta |
149 |
Q |
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||||||||| || |||||| ||| || || |||| |||||||||||||||||||| |||||||||||||||| |
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| T |
47371138 |
tcccacatagttttttattaacctactaagctctaaaatcttcctttcaacttcctccttgctaatattctta |
47371066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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