View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0249_high_2 (Length: 379)
Name: NF0249_high_2
Description: NF0249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0249_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 12762826 - 12763078
Alignment:
| Q |
11 |
cagagagacgtgtgtaattttttaaaatggttctcaaattcttgtgaagaccatccgacaatgatctactagagtatctgatttagttctacaatttcta |
110 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12762826 |
cagacagacgtgtgtaattttttaaaatgtttctcaaattcttgtgaagaccatccgacaatgatctactagagtatctgatttagttcttcaatttcta |
12762925 |
T |
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| Q |
111 |
gtattttagctaatcctaactttgaagtaaagtcttttaagcaacaaacgaatatgattgtttatattcttgcaaagacggtaatttcttagaccaatca |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12762926 |
gtattttagctaatcctaactttgaagtaaagtcttttaagcaacaaacaaatatgattgtttatattcttgcaaagacggtaatttcttagaccaatca |
12763025 |
T |
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| Q |
211 |
ccttgtgtttgtgtttgtgtttgttcctctttgtactgaactccttattattaatgata |
269 |
Q |
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| T |
12763026 |
cc------ttgtgtttgtgtttgttcctctttgtactgaactccttattattaatgata |
12763078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 12701826 - 12702043
Alignment:
| Q |
11 |
cagagagacgtgtgtaattttttaaaatggttctcaaattcttgtgaagaccatccgacaatgatctactagagtatctgatttagttctacaatttcta |
110 |
Q |
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|||| |||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12701826 |
cagacagacatgtgtaattttttaaaatgtttatcaaattcttgtgaagaccatccgacaatgatctactagagtatctgatttagttcttcaatttcta |
12701925 |
T |
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| Q |
111 |
gtattttagctaatcctaactttgaagtaaagtcttttaagcaacaaacgaatatgattgtttatattcttgcaaagacggtaatttcttagaccaatca |
210 |
Q |
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| T |
12701926 |
gtattttagctaatcctaactttgaagtaaagtcttttaagcaacaaacaaatatgattgtttatattcttgcaaagacggtaatttcttagaccaatca |
12702025 |
T |
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| Q |
211 |
ccttgtgtttgtgtttgt |
228 |
Q |
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|||||||||||||||||| |
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| T |
12702026 |
ccttgtgtttgtgtttgt |
12702043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 269 - 351
Target Start/End: Original strand, 12767330 - 12767412
Alignment:
| Q |
269 |
atgaattaaatttgtattagtnnnnnnnnnnctcagaggaaaaagatatgcagttggcaaagtaattgacggtagagattcat |
351 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12767330 |
atgaattaaatttgtattagtaaaaaaaaaactcagaggaaaaagatatgcagttggcaaagtaattgacggtagagattcat |
12767412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 12706229 - 12706280
Alignment:
| Q |
300 |
ctcagaggaaaaagatatgcagttggcaaagtaattgacggtagagattcat |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12706229 |
ctcagaggaaaaagatatgcagttggcaaagtaattgacggtagagattcat |
12706280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 40232664 - 40232603
Alignment:
| Q |
222 |
tgtttgtgtttgttcctctttgtactgaactccttattattaatgatatgaattaaatttgt |
283 |
Q |
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| T |
40232664 |
tgtttgagtttgttcctcttggtatcgaactccttttgattaatgatttgaattaagtttgt |
40232603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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